RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 HIST3H3Q16695 136 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF260Q3ZCT1 412 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 OR52W1Q6IF63 320 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 C11orf88Q6PI97 169 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 FJX1Q86VR8 437 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 ANGPTL5Q86XS5 388 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 BPIFB2Q8N4F0 458 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 AQP3Q92482 292 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 PTX4Q96A99 478 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 ZBTB8AQ96BR9 441 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 SLC6A7Q99884 636 aa17.12■□□□□ 0.33
COL9A3-201ENST00000343916 C5orf63A6NC05 138 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 E9PLN8 166 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 L7N2F9 121 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 NTN3O00634 580 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-201ENST00000343916 ARPC5O15511 151 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 LIPCP11150 499 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 GNB3P16520 340 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF20P17024 532 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF93P35789 620 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-201ENST00000343916 QRFPP83859 136 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 SLC51BQ86UW2 128 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF584Q8IVC4 421 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 PNPLA2Q96AD5 504 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 CYYR1Q96J86 154 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 UCN2Q96RP3 112 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 SMOC1Q9H4F8 434 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 FBXO4Q9UKT5 387 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 A0A0A6YYH2 397 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 A6NJ64 397 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 OR4E1P0C645 316 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 ATF4P18848 351 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-201ENST00000343916 RAB6AP20340 208 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 CX3CR1P49238 355 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 SLC35A1P78382 337 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 SGCAQ16586 387 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 CDNFQ49AH0 187 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 TRIM61Q5EBN2 209 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 PHYHD1Q5SRE7 291 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 TMEM81Q6P7N7 255 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 OPN5Q6U736 354 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 FAM57BQ71RH2 274 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 TRAPPC6BQ86SZ2 158 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 GTPBP8Q8N3Z3 284 aaPredicted RBP17.11■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF385AQ96PM9 386 aaKnown RBP17.11■□□□□ 0.33
COL9A3-201ENST00000343916 NICN1Q9BSH3 213 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF416Q9BWM5 594 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF160Q9HCG1 818 aa17.11■□□□□ 0.33
COL9A3-201ENST00000343916 C9J4A7 227 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF17P17021 662 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 POU3F2P20265 443 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-201ENST00000343916 DHODHQ02127 395 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF468Q5VIY5 522 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-201ENST00000343916 NAA40Q86UY6 237 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 TMEM156Q8N614 296 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF700Q9H0M5 742 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 SLCO5A1Q9H2Y9 848 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 MCRIP1C9JLW8 97 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 F5H5P2 479 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 TSPAN4O14817 238 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 H3F3AP84243 136 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 ZFP36L1Q07352 338 aaKnown RBP17.1■□□□□ 0.33
COL9A3-201ENST00000343916 ATPAF1Q5TC12 328 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF529Q6P280 563 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF101Q8IZC7 436 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 ZNF283Q8N7M2 679 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 OR13C8Q8NGS7 320 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 WBP1Q96G27 269 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 LINC00052Q96N35 136 aa17.1■□□□□ 0.33
COL9A3-201ENST00000343916 FXYD6-FXYD2A0A087WZ82 144 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 hCG_1807616A0A1W2PRN6 198 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 POM121CA8CG34 1229 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 LAMTOR5O43504 91 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 WDPCPO95876 746 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 CD74P04233 296 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 EXT1Q16394 746 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 LPAL2Q16609 132 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 SFRP5Q5T4F7 317 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 C3P1Q6ZMU1 363 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 HDDC2Q7Z4H3 204 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 MAML2Q8IZL2 1156 aaPredicted RBP17.09■□□□□ 0.33
COL9A3-201ENST00000343916 TMEM104Q8NE00 496 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 CXorf58Q96LI9 332 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 UQCC2Q9BRT2 126 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 SELENOIQ9C0D9 397 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 FXYD6Q9H0Q3 95 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 YKT6O15498 198 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 ZIC3O60481 467 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 BPNT1O95861 308 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 CYC1P08574 325 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 LIFP15018 202 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 SSR4P51571 173 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 NHLRC3Q5JS37 347 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 RAB12Q6IQ22 244 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 LRRC18Q8N456 261 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 UPB1Q9UBR1 384 aa17.09■□□□□ 0.33
COL9A3-201ENST00000343916 TEX46H3BTG2 121 aa17.08■□□□□ 0.33
COL9A3-201ENST00000343916 OR3A4PP47883 348 aa17.08■□□□□ 0.33
COL9A3-201ENST00000343916 SEC61A1P61619 476 aaKnown RBP17.08■□□□□ 0.33
COL9A3-201ENST00000343916 RPS18P62269 152 aaKnown RBP17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms