RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 OR52A1Q9UKL2 312 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 YBX2Q9Y2T7 364 aaKnown RBP3.22□□□□□ -1.89
SYNE1-201ENST00000341594 PMS2P1A4D2B8 440 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 NME4O00746 187 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 PSEN2P49810 448 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 TNFRSF17Q02223 184 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 NKG7Q16617 165 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 SMIM4Q8WVI0 70 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 MCHR2Q969V1 340 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 CXorf58Q96LI9 332 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 RNF222A6NCQ9 220 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 CAV2P51636 162 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 SGSHP51688 502 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 GPLD1P80108 840 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 PDE7AQ13946 482 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 LRRC3BQ96PB8 259 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 EFCAB11Q9BUY7 163 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 PLSCR4Q9NRQ2 329 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 TMEM100Q9NV29 134 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 VPS29Q9UBQ0 182 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 GHRLQ9UBU3 117 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 IER3IP1Q9Y5U9 82 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 F6UZH7 168 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 ZIC3O60481 467 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 LEFTY1O75610 366 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 SYNGR4O95473 234 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 ZNF84P51523 738 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 SPANXN4Q5MJ08 99 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 ZNF546Q86UE3 836 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 CDC20BQ86Y33 519 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 BVESQ8NE79 360 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 CDT1Q9H211 546 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 ISG20L2Q9H9L3 353 aaKnown RBP3.22□□□□□ -1.89
SYNE1-201ENST00000341594 NCOR2Q9Y618 2525 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 GAPDHSO14556 408 aaPredicted RBP3.22□□□□□ -1.89
SYNE1-201ENST00000341594 GSG1Q2KHT4 349 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 PIP5KL1Q5T9C9 394 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 GRINAQ7Z429 371 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 C1orf87Q8N0U7 546 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 PXT1Q8NFP0 134 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 OR52L1Q8NGH7 329 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 HES4Q9HCC6 221 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 NDUFV2P19404 249 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 COL8A2P25067 703 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 LIPAP38571 399 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 RHOAP61586 193 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 GABRG1Q8N1C3 465 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 DMBX1Q8NFW5 382 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 TBL1XR1Q9BZK7 514 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 CGGBP1Q9UFW8 167 aaPredicted RBP3.22□□□□□ -1.89
SYNE1-201ENST00000341594 RAI2Q9Y5P3 530 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 A0A0B4J293 547 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 E5RGE8 158 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 LPLP06858 475 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 DUSP1P28562 367 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 SDHAP31040 664 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 F2RL1P55085 397 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 MEP1BQ16820 701 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 ZNF583Q96ND8 569 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 SPATC1LQ9H0A9 340 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 ZCWPW2A0A1B0GU75 182 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 AP4M1O00189 453 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 RHBDL1O75783 438 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 UBE3DQ7Z6J8 389 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 MVB12AQ96EY5 273 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 CDH20Q9HBT6 801 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 EXO1Q9UQ84 846 aaKnown RBP3.22□□□□□ -1.89
SYNE1-201ENST00000341594 SULT1A1P50225 295 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 PLP1P60201 277 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 KMT5CQ86Y97 462 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 SLC38A9Q8NBW4 561 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 AGBL5Q8NDL9 886 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 HMGCLL1Q8TB92 370 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 NEURL3Q96EH8 262 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 SLC35A3Q9Y2D2 325 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 AQP7P3A6NL99 342 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 HNRNPA1P09651 372 aaKnown RBP eCLIP3.22□□□□□ -1.89
SYNE1-201ENST00000341594 UQCRC2P22695 453 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 ELAVL2Q12926 359 aaKnown RBP3.22□□□□□ -1.89
SYNE1-201ENST00000341594 C9orf50Q5SZB4 431 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 AGBL4Q5VU57 503 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 FDX2Q6P4F2 183 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 PNKDQ8N490 385 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 C9orf62Q8N4C0 152 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 CYYR1Q96J86 154 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 ANGPTL4Q9BY76 406 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 FAM198AQ9UFP1 575 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 DSPPQ9NZW4 1301 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 MYADML2A6NDP7 307 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 UBE2CO00762 179 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 SPRY2O43597 315 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 PLPP2O43688 288 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 APELAP0DMC3 54 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 MED27Q6P2C8 311 aa3.22□□□□□ -1.89
SYNE1-201ENST00000341594 ZNF2Q9BSG1 426 aaPredicted RBP3.22□□□□□ -1.89
SYNE1-201ENST00000341594 PATZ1Q9HBE1 687 aaKnown RBP3.22□□□□□ -1.89
SYNE1-201ENST00000341594 GPR37L1O60883 481 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 BCHEP06276 602 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 OR4E1P0C645 316 aa3.21□□□□□ -1.89
SYNE1-201ENST00000341594 RAB5AP20339 215 aa3.21□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms