RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 PMS2P2O95744 297 aa13.05□□□□□ -0.32
PTPN9-201ENST00000306726 CASRP41180 1078 aa13.05□□□□□ -0.32
PTPN9-201ENST00000306726 FOXK1P85037 733 aa13.05□□□□□ -0.32
PTPN9-201ENST00000306726 PEA15Q15121 130 aa13.05□□□□□ -0.32
PTPN9-201ENST00000306726 PHLDA2Q53GA4 152 aa13.05□□□□□ -0.32
PTPN9-201ENST00000306726 ST7LQ8TDW4 575 aa13.05□□□□□ -0.32
PTPN9-201ENST00000306726 NEK7Q8TDX7 302 aa13.05□□□□□ -0.32
PTPN9-201ENST00000306726 DUSP15Q9H1R2 295 aaPredicted RBP13.05□□□□□ -0.32
PTPN9-201ENST00000306726 GMEB2Q9UKD1 530 aa13.05□□□□□ -0.32
PTPN9-201ENST00000306726 IGKV1D-42A0A075B6H8 117 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 TMED7-TICAM2A0A0A6YYA0 188 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 LYPD3O95274 346 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 NAT2P11245 290 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 RPA2P15927 270 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 RPS27AP62979 156 aaKnown RBP13.04□□□□□ -0.32
PTPN9-201ENST00000306726 UBA52P62987 128 aaKnown RBP13.04□□□□□ -0.32
PTPN9-201ENST00000306726 GPHA2Q96T91 129 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 AMDHD2Q9Y303 409 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 CRYBA1P05813 215 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 MGAT2Q10469 447 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 RBMS3Q6XE24 437 aaKnown RBP13.04□□□□□ -0.32
PTPN9-201ENST00000306726 LDLRAD3Q86YD5 345 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 SPICQ8N5J4 248 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 VSTM2LQ96N03 204 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 LDAHQ9H6V9 325 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 SHANK1Q9Y566 2161 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 A0A1W2PPC4 97 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 OR2M5A3KFT3 312 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 GSTZ1O43708 216 aaPredicted RBP13.04□□□□□ -0.32
PTPN9-201ENST00000306726 CLEC12BQ2HXU8 276 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 SLC25A24Q6NUK1 477 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 PEG10Q86TG7 708 aaKnown RBP13.04□□□□□ -0.32
PTPN9-201ENST00000306726 OTOSQ8NHW6 89 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 KLHDC7BQ96G42 594 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 LIN37Q96GY3 246 aaPredicted RBP13.04□□□□□ -0.32
PTPN9-201ENST00000306726 SPSB2Q99619 263 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 USB1Q9BQ65 265 aaKnown RBP13.04□□□□□ -0.32
PTPN9-201ENST00000306726 SULT4A1Q9BR01 284 aa13.04□□□□□ -0.32
PTPN9-201ENST00000306726 RCL1Q9Y2P8 373 aaKnown RBP13.04□□□□□ -0.32
PTPN9-201ENST00000306726 TRAV14DV4A0A0A6YYC5 116 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 MSGN1A6NI15 193 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 SLC17A2O00624 439 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 SOCS1O15524 211 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 OR5H2Q8NGV7 314 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 NECAB3Q96P71 396 aaPredicted RBP13.03□□□□□ -0.32
PTPN9-201ENST00000306726 OR5B2Q96R09 309 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 PCNX3Q9H6A9 2034 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 ASH2LQ9UBL3 628 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 IGHV3-15A0A0B4J1V0 119 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 PNMTP11086 282 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 MGMTP16455 207 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 MST1P26927 711 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 ZNF93P35789 620 aaPredicted RBP13.03□□□□□ -0.32
PTPN9-201ENST00000306726 BLKP51451 505 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 PPIAP62937 165 aaKnown RBP13.03□□□□□ -0.32
PTPN9-201ENST00000306726 MRPS10P82664 201 aaKnown RBP13.03□□□□□ -0.32
PTPN9-201ENST00000306726 CHRFAM7AQ494W8 412 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 SPIN3Q5JUX0 258 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 RPL7L1Q6DKI1 246 aaKnown RBP13.03□□□□□ -0.32
PTPN9-201ENST00000306726 IGHV5-51A0A0C4DH38 117 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 ANGPTL7O43827 346 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 TPT1P13693 172 aaKnown RBP13.03□□□□□ -0.32
PTPN9-201ENST00000306726 NQO2P16083 231 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 NAGAP17050 411 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 RORAP35398 523 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 TSFMP43897 325 aaKnown RBP13.03□□□□□ -0.32
PTPN9-201ENST00000306726 EGR4Q05215 589 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 C9orf135Q5VTT2 229 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 ACOT7LQ6ZUV0 252 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 WWTR1Q9GZV5 400 aa13.03□□□□□ -0.32
PTPN9-201ENST00000306726 EXOSC3Q9NQT5 275 aaKnown RBP13.03□□□□□ -0.32
PTPN9-201ENST00000306726 FAM230AA0A1W2PPH8 454 aa13.02□□□□□ -0.32
PTPN9-201ENST00000306726 PRSS37A4D1T9 235 aa13.02□□□□□ -0.32
PTPN9-201ENST00000306726 ZNF850A8MQ14 1090 aa13.02□□□□□ -0.32
PTPN9-201ENST00000306726 DNASE2O00115 360 aaPredicted RBP13.02□□□□□ -0.32
PTPN9-201ENST00000306726 SULT1B1O43704 296 aa13.02□□□□□ -0.32
PTPN9-201ENST00000306726 NUDT21O43809 227 aaKnown RBP13.02□□□□□ -0.32
PTPN9-201ENST00000306726 LDOC1O95751 146 aaPredicted RBP13.02□□□□□ -0.32
PTPN9-201ENST00000306726 ACTL6AO96019 429 aa13.02□□□□□ -0.32
PTPN9-201ENST00000306726 PSMB6P28072 239 aa13.02□□□□□ -0.32
PTPN9-201ENST00000306726 RAB32Q13637 225 aa13.02□□□□□ -0.32
PTPN9-201ENST00000306726 ADGRE4PQ86SQ3 457 aa13.02□□□□□ -0.32
PTPN9-201ENST00000306726 SECTM1Q8WVN6 248 aa13.02□□□□□ -0.32
PTPN9-201ENST00000306726 RGCCQ9H4X1 137 aa13.02□□□□□ -0.32
PTPN9-201ENST00000306726 A0A0D9SG52 128 aa13.02□□□□□ -0.33
PTPN9-201ENST00000306726 H3BMH7 237 aa13.02□□□□□ -0.33
PTPN9-201ENST00000306726 BLVRBP30043 206 aaPredicted RBP13.02□□□□□ -0.33
PTPN9-201ENST00000306726 CLRN1P58418 232 aa13.02□□□□□ -0.33
PTPN9-201ENST00000306726 ALKBH2Q6NS38 261 aa13.02□□□□□ -0.33
PTPN9-201ENST00000306726 CLEC1AQ8NC01 280 aa13.02□□□□□ -0.33
PTPN9-201ENST00000306726 MFSD8Q8NHS3 518 aa13.02□□□□□ -0.33
PTPN9-201ENST00000306726 C15orf40Q8WUR7 153 aa13.02□□□□□ -0.33
PTPN9-201ENST00000306726 ASB5Q8WWX0 329 aa13.02□□□□□ -0.33
PTPN9-201ENST00000306726 PDE7BQ9NP56 450 aa13.02□□□□□ -0.33
PTPN9-201ENST00000306726 SERTAD3Q9UJW9 196 aa13.02□□□□□ -0.33
PTPN9-201ENST00000306726 hCG_1809904A0A1W2PP81 198 aa13.02□□□□□ -0.33
PTPN9-201ENST00000306726 A0A1W2PR64 198 aa13.02□□□□□ -0.33
PTPN9-201ENST00000306726 A0A1W2PRV1 198 aa13.02□□□□□ -0.33
PTPN9-201ENST00000306726 MEX3AA1L020 520 aaKnown RBP13.02□□□□□ -0.33
PTPN9-201ENST00000306726 RAB19A4D1S5 217 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms