RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 FAM166AQ6J272 317 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 INO80CQ6PI98 192 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-218ENST00000640036 KCTD20Q7Z5Y7 419 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 KLHDC1Q8N7A1 406 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 ASB9Q96DX5 294 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 KTI12Q96EK9 354 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-218ENST00000640036 PRRC1Q96M27 445 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 FOXB1Q99853 325 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 GSKIPQ9P0R6 139 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 MOKQ9UQ07 419 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 E9PLN8 166 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 M0R3H8 397 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 PSMG1O95456 288 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 SDC1P18827 310 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 VDAC1P21796 283 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 FCARP24071 287 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 NPBWR1P48145 328 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 DIO1P49895 249 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 ATP4BP51164 291 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 ETFDHQ16134 617 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 SLC25A30Q5SVS4 291 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 CYB5R2Q6BCY4 276 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 TMEM205Q6UW68 189 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 VTCN1Q7Z7D3 282 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 ZDHHC23Q8IYP9 409 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 LFNGQ8NES3 379 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 GLYATL2Q8WU03 294 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 VKORC1Q9BQB6 163 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 SUCNR1Q9BXA5 334 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 GLIPR2Q9H4G4 154 aa4.53□□□□□ -1.68
SCN1A-218ENST00000640036 TIMM8BQ9Y5J9 83 aaPredicted RBP4.53□□□□□ -1.68
SCN1A-218ENST00000640036 I3L521 148 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 M0R135 149 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 FGF17O60258 216 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 PRAF2O60831 178 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 GJB3O75712 270 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 TUSC2O75896 110 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 CT45A10P0DMU9 189 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 CD97P48960 835 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 RELBQ01201 579 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 KANK2Q63ZY3 851 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 HEPHL1Q6MZM0 1159 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 MFSD12Q6NUT3 480 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 SERPINA12Q8IW75 414 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 AQP12AQ8IXF9 295 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 MS4A15Q8N5U1 240 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 SDR9C7Q8NEX9 313 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 OR6K3Q8NGY3 331 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF799Q96GE5 643 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 ELOVL1Q9BW60 279 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 JAM3Q9BX67 310 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 CXCL16Q9H2A7 254 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 GCGP01275 180 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 TPT1P13693 172 aaKnown RBP4.52□□□□□ -1.69
SCN1A-218ENST00000640036 HOXA1P49639 335 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-218ENST00000640036 PMP22Q01453 160 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 ZFP82Q8N141 532 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 UBAC2Q8NBM4 344 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 OR2AK2Q8NG84 335 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 OR51A2Q8NGJ7 313 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 KCTD12Q96CX2 325 aaKnown RBP4.52□□□□□ -1.69
SCN1A-218ENST00000640036 SMIM14Q96QK8 99 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 BCL7BQ9BQE9 202 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 CGGBP1Q9UFW8 167 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-218ENST00000640036 GOLT1BQ9Y3E0 138 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 COL24A1Q17RW2 1714 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 TSPAN11A1L157 253 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF705EA8MWA4 302 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-218ENST00000640036 KIAA1324LA8MWY0 1029 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF593O00488 134 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-218ENST00000640036 RBBP9O75884 186 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 CAMLGP49069 296 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 DLX5P56178 289 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 PPP1CBP62140 327 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 FZD5Q13467 585 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 GAB4Q2WGN9 574 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 TMEM215Q68D42 235 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 FAHD1Q6P587 224 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 CYS1Q717R9 158 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 MEPCEQ7L2J0 689 aaKnown RBP4.52□□□□□ -1.69
SCN1A-218ENST00000640036 TMED4Q7Z7H5 227 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 CDH26Q8IXH8 852 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 PGBD5Q8N414 524 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 CYB561A3Q8NBI2 242 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 TMEM80Q96HE8 168 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 FUZQ9BT04 418 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 DPH3P1Q9H4G8 78 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 LPAR3Q9UBY5 353 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 ARAP2Q8WZ64 1704 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 IGHV3-64DA0A0J9YX35 117 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 A0A1W2PPK0 400 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 DHHO43323 396 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 DEFA6Q01524 100 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 CLINT1Q14677 625 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 GGTA1PQ4G0N0 100 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 CD300LGQ6UXG3 332 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 RPS27LQ71UM5 84 aaKnown RBP4.52□□□□□ -1.69
SCN1A-218ENST00000640036 FAM214BQ7L5A3 538 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 VRK3Q8IV63 474 aa4.52□□□□□ -1.69
SCN1A-218ENST00000640036 SGPP2Q8IWX5 399 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms