RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SDHAP31040 664 aa16.09■□□□□ 0.17
CLN3-262ENST00000637699 MAPRE2Q15555 327 aa16.09■□□□□ 0.17
CLN3-262ENST00000637699 MPPED2Q15777 294 aa16.09■□□□□ 0.17
CLN3-262ENST00000637699 TAF9Q16594 264 aa16.09■□□□□ 0.17
CLN3-262ENST00000637699 RSPO1Q2MKA7 263 aaPredicted RBP16.09■□□□□ 0.17
CLN3-262ENST00000637699 CLEC12AQ5QGZ9 265 aa16.09■□□□□ 0.17
CLN3-262ENST00000637699 CD276Q5ZPR3 534 aa16.09■□□□□ 0.17
CLN3-262ENST00000637699 SFRP4Q6FHJ7 346 aaPredicted RBP16.09■□□□□ 0.17
CLN3-262ENST00000637699 BOLLQ8N9W6 283 aaKnown RBP16.09■□□□□ 0.17
CLN3-262ENST00000637699 DYRK2Q92630 601 aa16.09■□□□□ 0.17
CLN3-262ENST00000637699 FAM46AQ96IP4 442 aaKnown RBP16.09■□□□□ 0.17
CLN3-262ENST00000637699 HDHD2Q9H0R4 259 aa16.09■□□□□ 0.17
CLN3-262ENST00000637699 VSX1Q9NZR4 365 aaPredicted RBP16.09■□□□□ 0.17
CLN3-262ENST00000637699 ERVK-18Q9QC07 812 aa16.09■□□□□ 0.17
CLN3-262ENST00000637699 CTSZQ9UBR2 303 aa16.09■□□□□ 0.17
CLN3-262ENST00000637699 IER3IP1Q9Y5U9 82 aa16.09■□□□□ 0.17
CLN3-262ENST00000637699 LHFPL6Q9Y693 200 aa16.09■□□□□ 0.17
CLN3-262ENST00000637699 A0A1B0GWJ7 208 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 NDUFB2O95178 105 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 ZNF682O95780 498 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 IGHV4-59P01825 116 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 MMP9P14780 707 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 NPY4RP50391 375 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 HIST1H3AP68431 136 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 GK2Q14410 553 aaPredicted RBP16.08■□□□□ 0.16
CLN3-262ENST00000637699 KCNMB1Q16558 191 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 HIST2H3PS2Q5TEC6 136 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 GPR139Q6DWJ6 353 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 PTCHD4Q6ZW05 846 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 HIST2H3AQ71DI3 136 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 Q8TCH9 128 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 LHX4Q969G2 390 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 ERGIC1Q969X5 290 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 WDFY2Q96P53 400 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 TSSK2Q96PF2 358 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 TRIM15Q9C019 465 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 TCF7L1Q9HCS4 588 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 NRIP3Q9NQ35 241 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 GMPR2Q9P2T1 348 aaKnown RBP16.08■□□□□ 0.16
CLN3-262ENST00000637699 CAPN7Q9Y6W3 813 aa16.08■□□□□ 0.16
CLN3-262ENST00000637699 IGHV1-69DA0A0B4J2H0 117 aa16.07■□□□□ 0.16
CLN3-262ENST00000637699 F5H5K5 113 aa16.07■□□□□ 0.16
CLN3-262ENST00000637699 TSPAN15O95858 294 aa16.07■□□□□ 0.16
CLN3-262ENST00000637699 IGHV1-69P01742 117 aa16.07■□□□□ 0.16
CLN3-262ENST00000637699 LIPFP07098 398 aa16.07■□□□□ 0.16
CLN3-262ENST00000637699 CD200P41217 278 aa16.07■□□□□ 0.16
CLN3-262ENST00000637699 CDKN2AP42771 156 aaKnown RBP16.07■□□□□ 0.16
CLN3-262ENST00000637699 RPL15P61313 204 aaKnown RBP16.07■□□□□ 0.16
CLN3-262ENST00000637699 METTL11BQ5VVY1 283 aa16.07■□□□□ 0.16
CLN3-262ENST00000637699 COLCA1Q6ZS62 124 aa16.07■□□□□ 0.16
CLN3-262ENST00000637699 CELF2-AS1Q8N7Q2 184 aa16.07■□□□□ 0.16
CLN3-262ENST00000637699 SLCO4A1Q96BD0 722 aa16.07■□□□□ 0.16
CLN3-262ENST00000637699 RCN3Q96D15 328 aa16.07■□□□□ 0.16
CLN3-262ENST00000637699 RASSF4Q9H2L5 321 aa16.07■□□□□ 0.16
CLN3-262ENST00000637699 GID8Q9NWU2 228 aa16.07■□□□□ 0.16
CLN3-262ENST00000637699 SIGLEC7Q9Y286 467 aa16.07■□□□□ 0.16
CLN3-262ENST00000637699 TMEM5Q9Y2B1 443 aa16.07■□□□□ 0.16
CLN3-262ENST00000637699 A0A0U1RQK1 487 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 SLC22A31A6NKX4 558 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 C3orf80F5H4A9 247 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 DCTN6O00399 190 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 SLC22A2O15244 555 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 ADAM20O43506 726 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 PTP4A3O75365 173 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 CLPXO76031 633 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 ACSM4P0C7M7 580 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 RAD23AP54725 363 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 PROK1P58294 105 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 KCNJ8Q15842 424 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 IFI44LQ53G44 452 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 FKBP9P1Q75LS8 142 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 ADCK1Q86TW2 530 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 NAA40Q86UY6 237 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 PDZD9Q8IXQ8 264 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 PNLDC1Q8NA58 520 aaKnown RBP16.06■□□□□ 0.16
CLN3-262ENST00000637699 SCCPDHQ8NBX0 429 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 FAM110DQ8TAY7 271 aaPredicted RBP16.06■□□□□ 0.16
CLN3-262ENST00000637699 SPRYD4Q8WW59 207 aaPredicted RBP16.06■□□□□ 0.16
CLN3-262ENST00000637699 FN3KRPQ9HA64 309 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 SMURF1Q9HCE7 757 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 RNF7Q9UBF6 113 aa16.06■□□□□ 0.16
CLN3-262ENST00000637699 LGALS8O00214 317 aa16.05■□□□□ 0.16
CLN3-262ENST00000637699 LCATP04180 440 aa16.05■□□□□ 0.16
CLN3-262ENST00000637699 CA6P23280 308 aa16.05■□□□□ 0.16
CLN3-262ENST00000637699 ARF6P62330 175 aa16.05■□□□□ 0.16
CLN3-262ENST00000637699 DBPQ10586 325 aaPredicted RBP16.05■□□□□ 0.16
CLN3-262ENST00000637699 MALLQ13021 153 aa16.05■□□□□ 0.16
CLN3-262ENST00000637699 OR8G1Q15617 311 aa16.05■□□□□ 0.16
CLN3-262ENST00000637699 OR8B8Q15620 311 aa16.05■□□□□ 0.16
CLN3-262ENST00000637699 PGM2L1Q6PCE3 622 aa16.05■□□□□ 0.16
CLN3-262ENST00000637699 PGAP1Q75T13 922 aa16.05■□□□□ 0.16
CLN3-262ENST00000637699 LINC00346Q8IVM7 164 aa16.05■□□□□ 0.16
CLN3-262ENST00000637699 SLC7A13Q8TCU3 470 aa16.05■□□□□ 0.16
CLN3-262ENST00000637699 PITX2Q99697 317 aa16.05■□□□□ 0.16
CLN3-262ENST00000637699 SIRPDQ9H106 197 aa16.05■□□□□ 0.16
CLN3-262ENST00000637699 SRA1Q9HD15 236 aaKnown RBP16.05■□□□□ 0.16
CLN3-262ENST00000637699 ATP8B1O43520 1251 aa16.04■□□□□ 0.16
CLN3-262ENST00000637699 COX4I1P13073 169 aa16.04■□□□□ 0.16
CLN3-262ENST00000637699 CRABP1P29762 137 aa16.04■□□□□ 0.16
CLN3-262ENST00000637699 IER3P46695 156 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms