RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 MAP6Q96JE9 813 aa11.68□□□□□ -0.54
PNKP-228ENST00000637325 OR2V2Q96R30 315 aa11.68□□□□□ -0.54
PNKP-228ENST00000637325 COPS4Q9BT78 406 aa11.68□□□□□ -0.54
PNKP-228ENST00000637325 PNRC2Q9NPJ4 139 aaKnown RBP11.68□□□□□ -0.54
PNKP-228ENST00000637325 CMC2Q9NRP2 79 aa11.68□□□□□ -0.54
PNKP-228ENST00000637325 CENPMQ9NSP4 180 aa11.68□□□□□ -0.54
PNKP-228ENST00000637325 TMEM106BQ9NUM4 274 aa11.68□□□□□ -0.54
PNKP-228ENST00000637325 TMEM100Q9NV29 134 aa11.68□□□□□ -0.54
PNKP-228ENST00000637325 PCDHB10Q9UN67 800 aa11.68□□□□□ -0.54
PNKP-228ENST00000637325 PPP1R3CQ9UQK1 317 aa11.68□□□□□ -0.54
PNKP-228ENST00000637325 POMPQ9Y244 141 aa11.68□□□□□ -0.54
PNKP-228ENST00000637325 NPTNQ9Y639 398 aa11.68□□□□□ -0.54
PNKP-228ENST00000637325 COMMD3-BMI1R4GMX3 469 aa11.68□□□□□ -0.54
PNKP-228ENST00000637325 IQCF6A8MYZ5 107 aa11.67□□□□□ -0.54
PNKP-228ENST00000637325 PHF1O43189 567 aaPredicted RBP11.67□□□□□ -0.54
PNKP-228ENST00000637325 IGHV2-5P01817 119 aa11.67□□□□□ -0.54
PNKP-228ENST00000637325 CLUP10909 449 aa11.67□□□□□ -0.54
PNKP-228ENST00000637325 PAICSP22234 425 aaKnown RBP11.67□□□□□ -0.54
PNKP-228ENST00000637325 THBS2P35442 1172 aa11.67□□□□□ -0.54
PNKP-228ENST00000637325 SRP9P49458 86 aaKnown RBP11.67□□□□□ -0.54
PNKP-228ENST00000637325 RASSF2P50749 326 aa11.67□□□□□ -0.54
PNKP-228ENST00000637325 FAHD2BQ6P2I3 314 aaPredicted RBP11.67□□□□□ -0.54
PNKP-228ENST00000637325 SHQ1Q6PI26 577 aaKnown RBP11.67□□□□□ -0.54
PNKP-228ENST00000637325 COLCA1Q6ZS62 124 aa11.67□□□□□ -0.54
PNKP-228ENST00000637325 PGAP1Q75T13 922 aa11.67□□□□□ -0.54
PNKP-228ENST00000637325 MRPL21Q7Z2W9 205 aaKnown RBP11.67□□□□□ -0.54
PNKP-228ENST00000637325 ST7LQ8TDW4 575 aa11.67□□□□□ -0.54
PNKP-228ENST00000637325 SPRYD4Q8WW59 207 aaPredicted RBP11.67□□□□□ -0.54
PNKP-228ENST00000637325 SLCO4A1Q96BD0 722 aa11.67□□□□□ -0.54
PNKP-228ENST00000637325 FAHD2AQ96GK7 314 aa11.67□□□□□ -0.54
PNKP-228ENST00000637325 NMNAT2Q9BZQ4 307 aa11.67□□□□□ -0.54
PNKP-228ENST00000637325 DNAJB9Q9UBS3 223 aa11.67□□□□□ -0.54
PNKP-228ENST00000637325 N6AMT1Q9Y5N5 214 aa11.67□□□□□ -0.54
PNKP-228ENST00000637325 TCRBV3S1A0A5B6 114 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 FAM183AA6NL82 134 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 IFNL4K9M1U5 179 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 GSC2O15499 205 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 PLPP2O43688 288 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 ANXA8P13928 327 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 PRKXP51817 358 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 EIF2B1Q14232 305 aaKnown RBP11.66□□□□□ -0.54
PNKP-228ENST00000637325 GK2Q14410 553 aaPredicted RBP11.66□□□□□ -0.54
PNKP-228ENST00000637325 GINS1Q14691 196 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 ERI1Q8IV48 349 aaKnown RBP11.66□□□□□ -0.54
PNKP-228ENST00000637325 SPICQ8N5J4 248 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 OR10AD1Q8NGE0 317 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 OR10S1Q8NGN2 331 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 SLAMF6Q96DU3 332 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 MEGF10Q96KG7 1140 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 SLC30A2Q9BRI3 323 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 TEX12Q9BXU0 123 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 CADM1Q9BY67 442 aaKnown RBP11.66□□□□□ -0.54
PNKP-228ENST00000637325 OR51V1Q9H2C8 321 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 MED20Q9H944 212 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 DDX28Q9NUL7 540 aaKnown RBP11.66□□□□□ -0.54
PNKP-228ENST00000637325 DCAF16Q9NXF7 216 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 KIF17Q9P2E2 1029 aa11.66□□□□□ -0.54
PNKP-228ENST00000637325 FBN1P35555 2871 aaKnown RBP11.66□□□□□ -0.54
PNKP-228ENST00000637325 A0A0G2JMP0 313 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 A0A0X1KG70 313 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 GGT3PA6NGU5 568 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 ZNF878C9JN71 531 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 PRR23D1E9PI22 279 aaPredicted RBP11.65□□□□□ -0.54
PNKP-228ENST00000637325 F5H5P2 479 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 H0YL77 283 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 DEAF1O75398 565 aaPredicted RBP11.65□□□□□ -0.54
PNKP-228ENST00000637325 ATP5HO75947 161 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 IGHV2-70P01814 119 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 HMGN1P05114 100 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 PRR23D2P0DMB1 279 aaPredicted RBP11.65□□□□□ -0.54
PNKP-228ENST00000637325 OSMP13725 252 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 PRKACGP22612 351 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 GSTT1P30711 240 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 SLC15A1P46059 708 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 RAD23AP54725 363 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 PRSS12P56730 875 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 BTG1P62324 171 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 BNIP1Q12981 228 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 HNRNPA0Q13151 305 aaKnown RBP11.65□□□□□ -0.54
PNKP-228ENST00000637325 TEX30Q5JUR7 227 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 DRAM2Q6UX65 266 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 SPATC1Q76KD6 591 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 HS3ST5Q8IZT8 346 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 KLHL36Q8N4N3 616 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 OR4M2Q8NGB6 313 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 OR6N2Q8NGY6 317 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 PLEKHA8Q96JA3 519 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 INTS14Q96SY0 518 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 KCNJ15Q99712 375 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 GCM1Q9NP62 436 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 METRNQ9UJH8 293 aa11.65□□□□□ -0.54
PNKP-228ENST00000637325 IGHV3-64DA0A0J9YX35 117 aa11.64□□□□□ -0.55
PNKP-228ENST00000637325 LRRC30A6NM36 301 aa11.64□□□□□ -0.55
PNKP-228ENST00000637325 MLNRO43193 412 aa11.64□□□□□ -0.55
PNKP-228ENST00000637325 FOXH1O75593 365 aa11.64□□□□□ -0.55
PNKP-228ENST00000637325 GLCEO94923 617 aa11.64□□□□□ -0.55
PNKP-228ENST00000637325 PNPP00491 289 aa11.64□□□□□ -0.55
PNKP-228ENST00000637325 HLA-DPB1P04440 258 aa11.64□□□□□ -0.55
PNKP-228ENST00000637325 PSKH1P11801 424 aa11.64□□□□□ -0.55
PNKP-228ENST00000637325 IRF2P14316 349 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms