RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 IQCJQ1A5X6 159 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 TRMT12Q53H54 448 aaKnown RBP5.06□□□□□ -1.6
SCN1A-209ENST00000635750 TMEM64Q6YI46 380 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 FBXO27Q8NI29 283 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 BCL7CQ8WUZ0 217 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-209ENST00000635750 MRAP2Q96G30 205 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 ZDHHC11Q9H8X9 412 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 NUP188Q5SRE5 1749 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 TMEM30CPA0ZSE6 113 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 NME4O00746 187 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 SCGB1A1P11684 91 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 SNRPBP14678 240 aaKnown RBP5.06□□□□□ -1.6
SCN1A-209ENST00000635750 GPR3P46089 330 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 MTNR1BP49286 362 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 TAS2R60P59551 318 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 EIF3IQ13347 325 aaKnown RBP5.06□□□□□ -1.6
SCN1A-209ENST00000635750 PLK5Q496M5 336 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 TRAT1Q6PIZ9 186 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 OR1J1Q8NGS3 322 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 ZFAND2BQ8WV99 257 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 AUP1Q9Y679 476 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 SCN2AQ99250 2005 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 RP1L1Q8IWN7 2480 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-209ENST00000635750 TRBV4-1A0A0J9YWV2 114 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 A0A1B0GWA3 101 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 ZNF727A8MUV8 499 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 C9orf172C9J069 976 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 SEMA7AO75326 666 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 FGF2P09038 288 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 FAHP16930 419 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 ZNF17P17021 662 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 FECHP22830 423 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 BCL6P41182 706 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 HAAOP46952 286 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 ZNF273Q14593 569 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 PTOV1Q86YD1 416 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 SLC38A6Q8IZM9 456 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 ST8SIA1Q92185 356 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 DVL3Q92997 716 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-209ENST00000635750 OR8B4Q96RC9 309 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 PLA2G12AQ9BZM1 189 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 CHST6Q9GZX3 395 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 PIGMQ9H3S5 423 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 HINT3Q9NQE9 182 aaKnown RBP5.06□□□□□ -1.6
SCN1A-209ENST00000635750 MTCL1Q9Y4B5 1905 aaKnown RBP5.06□□□□□ -1.6
SCN1A-209ENST00000635750 AKAP11Q9UKA4 1901 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 ZNF701M0R085 212 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-209ENST00000635750 PHOX2AO14813 284 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 SNNO75324 88 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-209ENST00000635750 CBR3O75828 277 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 LYZL6O75951 148 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 ACSM4P0C7M7 580 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 SLC25A4P12235 298 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 ACP1P24666 158 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 PPP1CCP36873 323 aaKnown RBP5.06□□□□□ -1.6
SCN1A-209ENST00000635750 ID1P41134 155 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 CLDN15P56746 228 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 LSM11P83369 360 aaKnown RBP eCLIP5.06□□□□□ -1.6
SCN1A-209ENST00000635750 INSM1Q01101 510 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-209ENST00000635750 FOXK2Q01167 660 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 ACKR1Q16570 336 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 TCTN1Q2MV58 587 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 RNF212Q495C1 297 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 AGBL4Q5VU57 503 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 ZNF596Q8TC21 504 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 SLC37A2Q8TED4 501 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 MARC2Q969Z3 335 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 PCYT2Q99447 389 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 SIRT5Q9NXA8 310 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 C1RLQ9NZP8 487 aa5.06□□□□□ -1.6
SCN1A-209ENST00000635750 ZNF320A2RRD8 509 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 J3KTA2 159 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 GPR31O00270 319 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 GASTP01350 101 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 SBK2P0C263 348 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 ZNF26P17031 533 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-209ENST00000635750 ZBTB25P24278 435 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 OPRL1P41146 370 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 CLDN12P56749 244 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 NHLH1Q02575 133 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 NHLH2Q02577 135 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 ZNF816Q0VGE8 651 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-209ENST00000635750 FZD2Q14332 565 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 KCNAB1Q14722 419 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 CBLL1Q75N03 491 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 OR8B3Q8NGG8 313 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 OR13D1Q8NGV5 346 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 C14orf79Q96F83 325 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 OR8B2Q96RD0 313 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 SLC26A1Q9H2B4 701 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 KCNG2Q9UJ96 466 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 ZNF391Q9UJN7 358 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 UFC1Q9Y3C8 167 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 MDC1Q14676 2089 aaKnown RBP5.05□□□□□ -1.6
SCN1A-209ENST00000635750 IGHV3-64DA0A0J9YX35 117 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 CLEC18AA5D8T8 446 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 H0YIV9 168 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 TOX3O15405 576 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-209ENST00000635750 SULT1C4O75897 302 aa5.05□□□□□ -1.6
SCN1A-209ENST00000635750 OR4A8P0C604 315 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms