RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 BPIFB3P59826 476 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 GNB2P62879 340 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 HIST1H3AP68431 136 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 PPP1R8Q12972 351 aaKnown RBP10.47□□□□□ -0.73
TRIM28-212ENST00000597995 TSPAN31Q12999 210 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 ZNF181Q2M3W8 571 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 RSPO1Q2MKA7 263 aaPredicted RBP10.47□□□□□ -0.73
TRIM28-212ENST00000597995 ZNF362Q5T0B9 420 aaPredicted RBP10.47□□□□□ -0.73
TRIM28-212ENST00000597995 HIST2H3PS2Q5TEC6 136 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 LCN8Q6JVE9 175 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 ZNF620Q6ZNG0 422 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 HIST2H3AQ71DI3 136 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 KLBQ86Z14 1044 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 ATG16L2Q8NAA4 619 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 OR9Q2Q8NGE9 314 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 OR4K13Q8NH42 304 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 GNPDA2Q8TDQ7 276 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 DACT3Q96B18 629 aaPredicted RBP10.47□□□□□ -0.73
TRIM28-212ENST00000597995 DDOQ99489 341 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 EGLN3Q9H6Z9 239 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 TMEM165Q9HC07 324 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 SRA1Q9HD15 236 aaKnown RBP10.47□□□□□ -0.73
TRIM28-212ENST00000597995 KRCC1Q9NPI7 259 aaPredicted RBP10.47□□□□□ -0.73
TRIM28-212ENST00000597995 FAM53CQ9NYF3 392 aa10.47□□□□□ -0.73
TRIM28-212ENST00000597995 KIR2DS1A0A191URI9 304 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 OR6C68A6NDL8 312 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 DYNC1I1O14576 645 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 GASTP01350 101 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 RPS2P15880 293 aaKnown RBP10.46□□□□□ -0.73
TRIM28-212ENST00000597995 SRP9P49458 86 aaKnown RBP10.46□□□□□ -0.73
TRIM28-212ENST00000597995 RGS6P49758 472 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 ERFP50548 548 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 MNAT1P51948 309 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 TRIM25Q14258 630 aaKnown RBP10.46□□□□□ -0.73
TRIM28-212ENST00000597995 MIDNQ504T8 468 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 CORO6Q6QEF8 472 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 FBXW12Q6X9E4 464 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-212ENST00000597995 ZBTB46Q86UZ6 589 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 CCDC197Q8NCU1 140 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 SLC26A10Q8NG04 563 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 OR8G5Q8NG78 346 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 OR5L1Q8NGL2 311 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 OR8D4Q8NGM9 314 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 OR13G1Q8NGZ3 307 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 OR1F12Q8NHA8 337 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 ZNRF4Q8WWF5 429 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 NEIL1Q96FI4 390 aaPredicted RBP10.46□□□□□ -0.73
TRIM28-212ENST00000597995 CLPTM1LQ96KA5 538 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 MEGF10Q96KG7 1140 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 IFT27Q9BW83 186 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 FN3KQ9H479 309 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 TAS2R1Q9NYW7 299 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 ATPIF1Q9UII2 106 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 TMCC3Q9ULS5 477 aa10.46□□□□□ -0.73
TRIM28-212ENST00000597995 IGHV3OR16-10A0A075B7F0 116 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 TRAV40A0A0B4J280 105 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 A0A0G2JK05 382 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 TNFRSF11BO00300 401 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 BHLHE40O14503 412 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 KRT36O76013 467 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 CALB2P22676 271 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 CRABP1P29762 137 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 IFNGR2P38484 337 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 CENPAP49450 140 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 COX10Q12887 443 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 CLEC12AQ5QGZ9 265 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 SLC35F1Q5T1Q4 408 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 SPATC1Q76KD6 591 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 NLRC3Q7RTR2 1065 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 C1orf87Q8N0U7 546 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 ARHGAP24Q8N264 748 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 SDR9C7Q8NEX9 313 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 TMEM246Q9BRR3 403 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 TRIM15Q9C019 465 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 BEX1Q9HBH7 125 aa10.45□□□□□ -0.74
TRIM28-212ENST00000597995 RPRD1BQ9NQG5 326 aaKnown RBP10.45□□□□□ -0.74
TRIM28-212ENST00000597995 MRPL22Q9NWU5 206 aaKnown RBP10.45□□□□□ -0.74
TRIM28-212ENST00000597995 SOX21Q9Y651 276 aaPredicted RBP10.45□□□□□ -0.74
TRIM28-212ENST00000597995 VWFP04275 2813 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 LRRC30A6NM36 301 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 SRRM5B3KS81 715 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 ACOT8O14734 319 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 HOXA3O43365 443 aaPredicted RBP10.44□□□□□ -0.74
TRIM28-212ENST00000597995 IDH3BO43837 385 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 KNG1P01042 644 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 CRYBA1P05813 215 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 PSKH1P11801 424 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 GGT2P36268 569 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.44□□□□□ -0.74
TRIM28-212ENST00000597995 DEFB112Q30KQ8 113 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 KRTAP27-1Q3LI81 207 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 ZNF404Q494X3 552 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 SLC18B1Q6NT16 456 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 DNM1P34Q6PK57 102 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 CFAP77Q6ZQR2 320 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 JAZF1Q86VZ6 243 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 DHFR2Q86XF0 187 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 LINC00346Q8IVM7 164 aa10.44□□□□□ -0.74
TRIM28-212ENST00000597995 OR5AS1Q8N127 324 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms