RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ZNF584Q8IVC4 421 aa8.18□□□□□ -1.1
TRIM28-208ENST00000597172 SYS1Q8N2H4 156 aa8.18□□□□□ -1.1
TRIM28-208ENST00000597172 C17orf78Q8N4C9 275 aa8.18□□□□□ -1.1
TRIM28-208ENST00000597172 KLHL36Q8N4N3 616 aa8.18□□□□□ -1.1
TRIM28-208ENST00000597172 SLC7A6Q92536 515 aa8.18□□□□□ -1.1
TRIM28-208ENST00000597172 S100PBPQ96BU1 408 aa8.18□□□□□ -1.1
TRIM28-208ENST00000597172 C4orf36Q96KX1 117 aa8.18□□□□□ -1.1
TRIM28-208ENST00000597172 MND1Q9BWT6 205 aa8.18□□□□□ -1.1
TRIM28-208ENST00000597172 RNF121Q9H920 327 aa8.18□□□□□ -1.1
TRIM28-208ENST00000597172 DDX28Q9NUL7 540 aaKnown RBP8.18□□□□□ -1.1
TRIM28-208ENST00000597172 BABAM2Q9NXR7 383 aa8.18□□□□□ -1.1
TRIM28-208ENST00000597172 GNG8Q9UK08 70 aa8.18□□□□□ -1.1
TRIM28-208ENST00000597172 FBXL3Q9UKT7 428 aa8.18□□□□□ -1.1
TRIM28-208ENST00000597172 LRP12Q9Y561 859 aa8.18□□□□□ -1.1
TRIM28-208ENST00000597172 SLC25A15Q9Y619 301 aa8.18□□□□□ -1.1
TRIM28-208ENST00000597172 SIRT4Q9Y6E7 314 aaPredicted RBP8.18□□□□□ -1.1
TRIM28-208ENST00000597172 PRKDCP78527 4128 aaKnown RBP8.17□□□□□ -1.1
TRIM28-208ENST00000597172 LOC100509620A0A075B734 347 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 MYL12BO14950 172 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 SGCEO43556 437 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 ZNF254O75437 659 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 RPP14O95059 124 aaKnown RBP8.17□□□□□ -1.1
TRIM28-208ENST00000597172 UBL3O95164 117 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 CLPTM1O96005 669 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 PNPP00491 289 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 MT-ND5P03915 603 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 THBDP07204 575 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 DBHP09172 617 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 H2BFMP0C1H6 154 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 CBR1P16152 277 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 CRYGSP22914 178 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 ANOS1P23352 680 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 IL32P24001 234 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 PSMB10P40306 273 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 ALDH3B2P48448 385 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 GTF2A1P52655 376 aaPredicted RBP8.17□□□□□ -1.1
TRIM28-208ENST00000597172 GP2P55259 537 aaKnown RBP8.17□□□□□ -1.1
TRIM28-208ENST00000597172 WNT4P56705 351 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 UBE2NP61088 152 aaKnown RBP8.17□□□□□ -1.1
TRIM28-208ENST00000597172 ACSM1Q08AH1 577 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 RAB39AQ14964 217 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 RAB35Q15286 201 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 SPHARQ15513 63 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 TAB1Q15750 504 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 NEDD8Q15843 81 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 GSG1Q2KHT4 349 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 TIMM23BQ5SRD1 257 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 SYT6Q5T7P8 510 aaPredicted RBP8.17□□□□□ -1.1
TRIM28-208ENST00000597172 TMEM53Q6P2H8 277 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 SEZ6L2Q6UXD5 910 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 KRT77Q7Z794 578 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 P2RY8Q86VZ1 359 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 KLBQ86Z14 1044 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 SVOPQ8N4V2 548 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 YIPF7Q8N8F6 280 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 STEAP2Q8NFT2 490 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 OR1F12Q8NHA8 337 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 RORBQ92753 470 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 RNASE6Q93091 150 aaKnown RBP8.17□□□□□ -1.1
TRIM28-208ENST00000597172 MUL1Q969V5 352 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 PPP1R14AQ96A00 147 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 TMIGD2Q96BF3 282 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 PELI1Q96FA3 418 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 COG8Q96MW5 612 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 COQ7Q99807 217 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 C1QTNF6Q9BXI9 259 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 MROQ9BYG7 248 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 ACTR6Q9GZN1 396 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 OR10A4Q9H209 315 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 ACOXLQ9NUZ1 547 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 PLEK2Q9NYT0 353 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 CRNNQ9UBG3 495 aaPredicted RBP8.17□□□□□ -1.1
TRIM28-208ENST00000597172 IKZF2Q9UKS7 526 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 GRIP1Q9Y3R0 1128 aa8.17□□□□□ -1.1
TRIM28-208ENST00000597172 C5orf63A6NC05 138 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 ZNF878C9JN71 531 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 OGG1O15527 345 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 DOK2O60496 412 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 IGKV3-15P01624 115 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 SERPINA5P05154 406 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 KRT8P05787 483 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 CELA3BP08861 270 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 TACSTD2P09758 323 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 COX5BP10606 129 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 ZNF14P17017 642 aaPredicted RBP8.16□□□□□ -1.1
TRIM28-208ENST00000597172 APEX1P27695 318 aaKnown RBP8.16□□□□□ -1.1
TRIM28-208ENST00000597172 OTX1P32242 354 aaPredicted RBP8.16□□□□□ -1.1
TRIM28-208ENST00000597172 DCTDP32321 178 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 RIDAP52758 137 aaKnown RBP8.16□□□□□ -1.1
TRIM28-208ENST00000597172 NR1H2P55055 460 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 NANOS3P60323 173 aaKnown RBP8.16□□□□□ -1.1
TRIM28-208ENST00000597172 ACTA2P62736 377 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 ACTG2P63267 376 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 GALK2Q01415 458 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 HGFACQ04756 655 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 ECH1Q13011 328 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 MED22Q15528 200 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 FDX2Q6P4F2 183 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 ZNF367Q7RTV3 350 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 PRSS45Q7RTY3 260 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms