RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 SLC35F1Q5T1Q4 408 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 LRRC28Q86X40 367 aaPredicted RBP8.89□□□□□ -0.99
LIG3-212ENST00000590181 C10orf67Q8IYJ2 551 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 ZNF454Q8N9F8 522 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 SDR9C7Q8NEX9 313 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 OR2Z1Q8NG97 314 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 OR4M2Q8NGB6 313 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 OR9Q2Q8NGE9 314 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 ST7LQ8TDW4 575 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 ZFAND2BQ8WV99 257 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 TSSK2Q96PF2 358 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 SLC30A2Q9BRI3 323 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 PRRG3Q9BZD7 231 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 EGLN3Q9H6Z9 239 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 ZNF665Q9H7R5 613 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 MARCH7Q9H992 704 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 TRIM36Q9NQ86 728 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 TMEM106BQ9NUM4 274 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 METRNQ9UJH8 293 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 ZNF391Q9UJN7 358 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 WIPI2Q9Y4P8 454 aa8.89□□□□□ -0.99
LIG3-212ENST00000590181 ZSCAN5BA6NJL1 495 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 ZNF878C9JN71 531 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 F5H5K5 113 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 M0R135 149 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 XRCC2O43543 280 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 CDC14BO60729 498 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 E2F6O75461 281 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 PNPP00491 289 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 IGHV2-5P01817 119 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 SRP14P37108 136 aaKnown RBP8.88□□□□□ -0.99
LIG3-212ENST00000590181 MDH2P40926 338 aaKnown RBP8.88□□□□□ -0.99
LIG3-212ENST00000590181 RAD23AP54725 363 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 BNIP1Q12981 228 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 TAF13Q15543 124 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 TRIP10Q15642 601 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 RSPO1Q2MKA7 263 aaPredicted RBP8.88□□□□□ -0.99
LIG3-212ENST00000590181 ALKBH6Q3KRA9 238 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 SLC35D3Q5M8T2 416 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 USP43Q70EL4 1123 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 PGAP1Q75T13 922 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 ADGRG5Q8IZF4 528 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 FTMTQ8N4E7 242 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 ATG16L2Q8NAA4 619 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 SLC37A3Q8NCC5 494 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 OR52H1Q8NGJ2 320 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 CANT1Q8WVQ1 401 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 CCDC124Q96CT7 223 aaKnown RBP8.88□□□□□ -0.99
LIG3-212ENST00000590181 ZNF799Q96GE5 643 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 CLPTM1LQ96KA5 538 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 KCNJ15Q99712 375 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 RGCCQ9H4X1 137 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 NIPAL2Q9H841 368 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 MSL2Q9HCI7 577 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 ABCB9Q9NP78 766 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 HIF1ANQ9NWT6 349 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 MRPL15Q9P015 296 aaKnown RBP8.88□□□□□ -0.99
LIG3-212ENST00000590181 PCDHB10Q9UN67 800 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 U3KQV3 271 aa8.88□□□□□ -0.99
LIG3-212ENST00000590181 ACOD1A6NK06 481 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 H3BN98 237 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 ZNF593O00488 134 aaPredicted RBP8.87□□□□□ -0.99
LIG3-212ENST00000590181 NDUFA2O43678 99 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 GLCEO94923 617 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 LCATP04180 440 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 PPIAL4GP0DN37 164 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 FCGR1AP12314 374 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 OSMP13725 252 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 SPI1P17947 270 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 BTG1P62324 171 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 ESRRGP62508 458 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 DEGS2Q6QHC5 323 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 PARP8Q8N3A8 854 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 OR11L1Q8NGX0 322 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 Q8TCH9 128 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 SPRYD4Q8WW59 207 aaPredicted RBP8.87□□□□□ -0.99
LIG3-212ENST00000590181 PLEKHA8Q96JA3 519 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 JMJD8Q96S16 334 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 GAL3ST1Q99999 423 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 FN3KQ9H479 309 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 GCM1Q9NP62 436 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 PNRC2Q9NPJ4 139 aaKnown RBP8.87□□□□□ -0.99
LIG3-212ENST00000590181 MRPL22Q9NWU5 206 aaKnown RBP8.87□□□□□ -0.99
LIG3-212ENST00000590181 TREM2Q9NZC2 230 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 PDP1Q9P0J1 537 aaPredicted RBP8.87□□□□□ -0.99
LIG3-212ENST00000590181 MIOXQ9UGB7 285 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 POMPQ9Y244 141 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 LRCH1Q9Y2L9 728 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 COMMD3-BMI1R4GMX3 469 aa8.87□□□□□ -0.99
LIG3-212ENST00000590181 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.86□□□□□ -0.99
LIG3-212ENST00000590181 PRR23D1E9PI22 279 aaPredicted RBP8.86□□□□□ -0.99
LIG3-212ENST00000590181 TMEM178BH3BS89 294 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 GSC2O15499 205 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 PTBP3O95758 552 aaKnown RBP8.86□□□□□ -0.99
LIG3-212ENST00000590181 IGHV2-70P01814 119 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 DBHP09172 617 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 PRR23D2P0DMB1 279 aaPredicted RBP8.86□□□□□ -0.99
LIG3-212ENST00000590181 IRF2P14316 349 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 GSTT1P30711 240 aa8.86□□□□□ -0.99
LIG3-212ENST00000590181 IL2RGP31785 369 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms