RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 NPTNQ9Y639 398 aa3.31□□□□□ -1.88
SMCHD1-208ENST00000583344 CSNK1G3Q9Y6M4 447 aa3.31□□□□□ -1.88
SMCHD1-208ENST00000583344 NOTCH2Q04721 2471 aa3.31□□□□□ -1.88
SMCHD1-208ENST00000583344 COL4A6Q14031 1691 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 IGHV3OR16-10A0A075B7F0 116 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 A0A087WUU8 490 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 MEIKINA0A087WXM9 373 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 TRAV1-2A0A0B4J238 106 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 LINC00854A0A1B0GVQ3 168 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 A8MX80 341 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 H3BN98 237 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 GABRPO00591 440 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 CASKO14936 926 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 SURF4O15260 269 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 GSTZ1O43708 216 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 CHP2O43745 196 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 B4GALT2O60909 372 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 SC5DO75845 299 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 CXCL14O95715 111 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 EPPINO95925 133 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 LALBAP00709 142 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 IFNA7P01567 189 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 TCRBP04435 133 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 SERPIND1P05546 499 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 CSN3P07498 182 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 IL3P08700 152 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 KRTAP1-4P0C5Y4 121 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 ANKRD34CP0C6C1 535 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 SULT1A3P0DMM9 295 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 SULT1A4P0DMN0 295 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 OR12D1P0DN82 309 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 RRASP10301 218 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 ERGP11308 486 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 CTRB1P17538 263 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 ELK1P19419 428 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 TNNI3P19429 210 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 ACP1P24666 158 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 RBMS1P29558 406 aaKnown RBP3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 HTR1FP30939 366 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 BTCP35070 178 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 HSD17B2P37059 387 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 FEN1P39748 380 aaKnown RBP3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 SLC1A3P43003 542 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 OMPP47874 163 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 PITPNBP48739 271 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 CCT3P49368 545 aaKnown RBP3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 GBX2P52951 348 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 CTBP2P56545 445 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 CX3CL1P78423 397 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 PITPNAQ00169 270 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 RGS1Q08116 209 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 DDX39BQ13838 428 aaKnown RBP3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 IL18Q14116 193 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 ARHGAP19Q14CB8 494 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 LGALSLQ3ZCW2 172 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 SLC36A2Q495M3 483 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 CCSMST1Q4G0I0 132 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 OR2G6Q5TZ20 316 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 FAM46CQ5VWP2 391 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 CTRB2Q6GPI1 263 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 TMEM220Q6QAJ8 160 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 ANGPTL8Q6UXH0 198 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 UNQ9370/PRO34162Q6UXP9 181 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 B3GLCTQ6Y288 498 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 TMEM64Q6YI46 380 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 HSD11B1LQ7Z5J1 315 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 RBM45Q8IUH3 476 aaKnown RBP3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 SLC38A6Q8IZM9 456 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 RASGEF1AQ8N9B8 481 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 FAM71CQ8NEG0 241 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 OR4M2Q8NGB6 313 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 OR4K5Q8NGD3 323 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 OR2A12Q8NGT7 310 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 OR6K2Q8NGY2 324 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 CDC26Q8NHZ8 85 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 LHFPL5Q8TAF8 219 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 ZNF519Q8TB69 540 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 SFXN5Q8TD22 340 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 HAVCR2Q8TDQ0 301 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 RNF128Q8TEB7 428 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 SSMEM1Q8WWF3 244 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 SLC5A11Q8WWX8 675 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 GTF3AQ92664 365 aaKnown RBP3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 OSTF1Q92882 214 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 GLYATL1Q969I3 302 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 TMEM203Q969S6 136 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 FAM46BQ96A09 425 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 UPRTQ96BW1 309 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 ZNF514Q96K75 400 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 PRRC1Q96M27 445 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 ZNF578Q96N58 590 aaPredicted RBP3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 SLC38A2Q96QD8 506 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 GPA33Q99795 319 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 ARHGDIGQ99819 225 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 SSX3Q99909 188 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 C17orf62Q9BQA9 187 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 WFDC6Q9BQY6 131 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 RIOK2Q9BVS4 552 aaKnown RBP3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 TPPP3Q9BW30 176 aa3.3□□□□□ -1.88
SMCHD1-208ENST00000583344 BEX2Q9BXY8 128 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms