RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 TBC1D28Q2M2D7 210 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 UNQ9370/PRO34162Q6UXP9 181 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 Q6ZSR3 168 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 TUBA1AQ71U36 451 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 MDP1Q86V88 176 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 KBTBD8Q8NFY9 601 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 C10orf35Q96D05 121 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 POM121L2Q96KW2 1035 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 TMED9Q9BVK6 235 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 C1QTNF5Q9BXJ0 243 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 OR10A2Q9H208 303 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 OR51E2Q9H255 320 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 OPA3Q9H6K4 179 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 TBCCD1Q9NVR7 557 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 SLC25A15Q9Y619 301 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 TRBV5-5A0A0J9YX44 114 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 LOC390937A0A1W2PQ73 354 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 ZNF503-AS2A6NEH8 195 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 DHRS7CA6NNS2 312 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 GPX5O75715 221 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 IGLV3-1P01715 115 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 TTRP02766 147 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 ANXA2P07355 339 aaKnown RBP13.28□□□□□ -0.28
SS18-215ENST00000580642 PCSK6P29122 969 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 RPS11P62280 158 aaKnown RBP eCLIP13.28□□□□□ -0.28
SS18-215ENST00000580642 FABP5Q01469 135 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 MFGE8Q08431 387 aaPredicted RBP13.28□□□□□ -0.28
SS18-215ENST00000580642 Q499Y3 187 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 ACSM3Q53FZ2 586 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 FOXB2Q5VYV0 432 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 XKRXQ6PP77 449 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 USP43Q70EL4 1123 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 ZNF808Q8N4W9 903 aaPredicted RBP13.28□□□□□ -0.28
SS18-215ENST00000580642 RNASE6Q93091 150 aaKnown RBP13.28□□□□□ -0.28
SS18-215ENST00000580642 APOBEC3DQ96AK3 386 aaPredicted RBP13.28□□□□□ -0.28
SS18-215ENST00000580642 C12orf43Q96C57 262 aaKnown RBP13.28□□□□□ -0.28
SS18-215ENST00000580642 PGAM5Q96HS1 289 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 KCTD7Q96MP8 289 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 PDCD1LG2Q9BQ51 273 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 CHCHD6Q9BRQ6 235 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 MED18Q9BUE0 208 aa13.28□□□□□ -0.28
SS18-215ENST00000580642 TXNL4BQ9NX01 149 aaKnown RBP13.28□□□□□ -0.28
SS18-215ENST00000580642 INTS1Q8N201 2190 aaKnown RBP13.28□□□□□ -0.28
SS18-215ENST00000580642 SPENQ96T58 3664 aaKnown RBP13.28□□□□□ -0.28
SS18-215ENST00000580642 NCOA6Q14686 2063 aaPredicted RBP13.27□□□□□ -0.28
SS18-215ENST00000580642 PNMA8CA0A1B0GUJ8 204 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 ZNF879B4DU55 563 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 GABRPO00591 440 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 LRRTM2O43300 516 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 XRCC2O43543 280 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 TMEM127O75204 238 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 CD2P06729 351 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 SLC6A9P48067 706 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 ADORA2A-AS1P86434 159 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 SORDQ00796 357 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 ZMAT1Q5H9K5 638 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 TMEM91Q6ZNR0 172 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 DOK3Q7L591 496 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 ZNF584Q8IVC4 421 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 PLPP7Q8NBV4 271 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 SLC30A7Q8NEW0 376 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 OR5L1Q8NGL2 311 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 TMEM203Q969S6 136 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 S100PBPQ96BU1 408 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 CCDC120Q96HB5 630 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 ACTR6Q9GZN1 396 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 NOX3Q9HBY0 568 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 GTF2A1LQ9UNN4 478 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 SLC22A13Q9Y226 551 aa13.27□□□□□ -0.29
SS18-215ENST00000580642 LOC100509620A0A075B734 347 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 TRAV1-2A0A0B4J238 106 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 LOC100506127A0A0U1RQW1 187 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 A0A1B0GVI7 797 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 C5orf49A4QMS7 147 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 MTRF1O75570 445 aaKnown RBP13.26□□□□□ -0.29
SS18-215ENST00000580642 IL1AP01583 271 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 UCHL1P09936 223 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 APEX1P27695 318 aaKnown RBP13.26□□□□□ -0.29
SS18-215ENST00000580642 PEX19P40855 299 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 MTNR1BP49286 362 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 FAM27E3Q08E93 113 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 PPA1Q15181 289 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 FAM57BQ71RH2 274 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 CEACAM19Q7Z692 300 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 FJX1Q86VR8 437 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 TPRA1Q86W33 373 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 ZNF843Q8N446 348 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 OR8B12Q8NGG6 310 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 CA5BP1Q8WTZ4 195 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 AKAP1Q92667 903 aaKnown RBP eCLIP13.26□□□□□ -0.29
SS18-215ENST00000580642 SPSB4Q96A44 273 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 BBC3Q96PG8 261 aaPredicted RBP13.26□□□□□ -0.29
SS18-215ENST00000580642 NAA50Q9GZZ1 169 aaKnown RBP13.26□□□□□ -0.29
SS18-215ENST00000580642 EXOSC4Q9NPD3 245 aaKnown RBP13.26□□□□□ -0.29
SS18-215ENST00000580642 NGBQ9NPG2 151 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 EIF3KQ9UBQ5 218 aaKnown RBP13.26□□□□□ -0.29
SS18-215ENST00000580642 EPG5Q9HCE0 2579 aa13.26□□□□□ -0.29
SS18-215ENST00000580642 TRBV5-7A0A0A0MS05 114 aa13.25□□□□□ -0.29
SS18-215ENST00000580642 LOC107986453A0A1B0GWG9 222 aa13.25□□□□□ -0.29
SS18-215ENST00000580642 SYT7O43581 403 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms