RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 C10orf67Q8IYJ2 551 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 HAVCR1Q96D42 359 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 DIRC2Q96SL1 478 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 CIB1Q99828 191 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 C1QTNF5Q9BXJ0 243 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 DDX28Q9NUL7 540 aaKnown RBP16.59■□□□□ 0.25
SS18-209ENST00000578595 NKIRAS2Q9NYR9 191 aa16.59■□□□□ 0.25
SS18-209ENST00000578595 TBX1O43435 398 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 ANXA2P07355 339 aaKnown RBP16.58■□□□□ 0.24
SS18-209ENST00000578595 SLC2A1P11166 492 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 KITLGP21583 273 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 GZMKP49863 264 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 RSPO1Q2MKA7 263 aaPredicted RBP16.58■□□□□ 0.24
SS18-209ENST00000578595 TEX30Q5JUR7 227 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 LCN1P1Q5VSP4 162 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 KDM4DQ6B0I6 523 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 CYB5R2Q6BCY4 276 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 ZFP1Q6P2D0 407 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 FBXW12Q6X9E4 464 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 THEM6Q8WUY1 208 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 CCL17Q92583 94 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 ZNF582Q96NG8 517 aaPredicted RBP16.58■□□□□ 0.24
SS18-209ENST00000578595 KCNJ15Q99712 375 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 PKP2Q99959 881 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 ABHD6Q9BV23 337 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 DNAJC27Q9NZQ0 273 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 ORC6Q9Y5N6 252 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 NF1P21359 2839 aa16.58■□□□□ 0.24
SS18-209ENST00000578595 CLDN25C9JDP6 229 aa16.57■□□□□ 0.24
SS18-209ENST00000578595 MRPL3P09001 348 aaKnown RBP16.57■□□□□ 0.24
SS18-209ENST00000578595 H2BFMP0C1H6 154 aa16.57■□□□□ 0.24
SS18-209ENST00000578595 IGHV4-31P0DP07 118 aa16.57■□□□□ 0.24
SS18-209ENST00000578595 CX3CR1P49238 355 aa16.57■□□□□ 0.24
SS18-209ENST00000578595 GRB2P62993 217 aaKnown RBP16.57■□□□□ 0.24
SS18-209ENST00000578595 MRPS11P82912 194 aaKnown RBP16.57■□□□□ 0.24
SS18-209ENST00000578595 MVKQ03426 396 aa16.57■□□□□ 0.24
SS18-209ENST00000578595 RIN1Q13671 783 aa16.57■□□□□ 0.24
SS18-209ENST00000578595 SLC35D3Q5M8T2 416 aa16.57■□□□□ 0.24
SS18-209ENST00000578595 AVPI1Q5T686 147 aa16.57■□□□□ 0.24
SS18-209ENST00000578595 DRAM2Q6UX65 266 aa16.57■□□□□ 0.24
SS18-209ENST00000578595 PGAP1Q75T13 922 aa16.57■□□□□ 0.24
SS18-209ENST00000578595 OR10AD1Q8NGE0 317 aa16.57■□□□□ 0.24
SS18-209ENST00000578595 ST7LQ8TDW4 575 aa16.57■□□□□ 0.24
SS18-209ENST00000578595 TIMD4Q96H15 378 aa16.57■□□□□ 0.24
SS18-209ENST00000578595 BRD7Q9NPI1 651 aa16.57■□□□□ 0.24
SS18-209ENST00000578595 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.57■□□□□ 0.24
SS18-209ENST00000578595 H2AFY2Q9P0M6 372 aaPredicted RBP16.57■□□□□ 0.24
SS18-209ENST00000578595 CACNG2Q9Y698 323 aa16.57■□□□□ 0.24
SS18-209ENST00000578595 ISPDA4D126 451 aa16.56■□□□□ 0.24
SS18-209ENST00000578595 TLX2O43763 284 aaPredicted RBP16.56■□□□□ 0.24
SS18-209ENST00000578595 PRKYO43930 277 aa16.56■□□□□ 0.24
SS18-209ENST00000578595 LYNP07948 512 aa16.56■□□□□ 0.24
SS18-209ENST00000578595 SELEP16581 610 aa16.56■□□□□ 0.24
SS18-209ENST00000578595 EPHA2P29317 976 aa16.56■□□□□ 0.24
SS18-209ENST00000578595 CRYBB2P43320 205 aa16.56■□□□□ 0.24
SS18-209ENST00000578595 GK2Q14410 553 aaPredicted RBP16.56■□□□□ 0.24
SS18-209ENST00000578595 PCK2Q16822 640 aa16.56■□□□□ 0.24
SS18-209ENST00000578595 GFOD2Q3B7J2 385 aa16.56■□□□□ 0.24
SS18-209ENST00000578595 SNAI3Q3KNW1 292 aa16.56■□□□□ 0.24
SS18-209ENST00000578595 KRTAP27-1Q3LI81 207 aa16.56■□□□□ 0.24
SS18-209ENST00000578595 C6orf52Q5T4I8 152 aa16.56■□□□□ 0.24
SS18-209ENST00000578595 ZNF771Q7L3S4 317 aaPredicted RBP16.56■□□□□ 0.24
SS18-209ENST00000578595 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.56■□□□□ 0.24
SS18-209ENST00000578595 TIGD4Q8IY51 512 aa16.56■□□□□ 0.24
SS18-209ENST00000578595 TCEANCQ8N8B7 351 aa16.56■□□□□ 0.24
SS18-209ENST00000578595 OR2AE1Q8NHA4 323 aa16.56■□□□□ 0.24
SS18-209ENST00000578595 SPRYD4Q8WW59 207 aaPredicted RBP16.56■□□□□ 0.24
SS18-209ENST00000578595 RBM4BQ9BQ04 359 aaKnown RBP16.56■□□□□ 0.24
SS18-209ENST00000578595 LOC100289279A0A1B0GTE1 492 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 GGT3PA6NGU5 568 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 A8MV72 311 aaPredicted RBP16.55■□□□□ 0.24
SS18-209ENST00000578595 LILRA1O75019 489 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 RP2O75695 350 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 TNFRSF1AP19438 455 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 RAD23AP54725 363 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 TMEM33P57088 247 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 CDK5R2Q13319 367 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 SLX4IPQ5VYV7 408 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 Q6ZR03 302 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 COLCA1Q6ZS62 124 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 OR8G5Q8NG78 346 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 IL4I1Q96RQ9 567 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 AMELYQ99218 206 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 TOR3AQ9H497 397 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 MARCH7Q9H992 704 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 LAMP5Q9UJQ1 280 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 WNK2Q9Y3S1 2297 aa16.55■□□□□ 0.24
SS18-209ENST00000578595 JMJD1CQ15652 2540 aa16.54■□□□□ 0.24
SS18-209ENST00000578595 ZAR1LA6NP61 321 aa16.54■□□□□ 0.24
SS18-209ENST00000578595 H3BNX3 289 aa16.54■□□□□ 0.24
SS18-209ENST00000578595 APOC1P02654 83 aa16.54■□□□□ 0.24
SS18-209ENST00000578595 ADH4P08319 380 aa16.54■□□□□ 0.24
SS18-209ENST00000578595 IL2RGP31785 369 aa16.54■□□□□ 0.24
SS18-209ENST00000578595 TIGD6Q17RP2 521 aa16.54■□□□□ 0.24
SS18-209ENST00000578595 GLYATL3Q5SZD4 288 aa16.54■□□□□ 0.24
SS18-209ENST00000578595 PEG10Q86TG7 708 aaKnown RBP16.54■□□□□ 0.24
SS18-209ENST00000578595 ZNF454Q8N9F8 522 aa16.54■□□□□ 0.24
SS18-209ENST00000578595 OR13G1Q8NGZ3 307 aa16.54■□□□□ 0.24
SS18-209ENST00000578595 OTOSQ8NHW6 89 aa16.54■□□□□ 0.24
SS18-209ENST00000578595 ITLN1Q8WWA0 313 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms