RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CYB5AP00167 134 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 CELA2AP08217 269 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 CDAP32320 146 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 H2BFSP57053 126 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 QRFPP83859 136 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 KCNMB1Q16558 191 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 ESCO2Q56NI9 601 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 CARD17Q5XLA6 110 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 RAB12Q6IQ22 244 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 TMEM81Q6P7N7 255 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 GALNT16Q8N428 558 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 SLC22A24Q8N4F4 322 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 OR2AK2Q8NG84 335 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 OR5D14Q8NGL3 314 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 OR2I1PQ8NGU4 316 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 OR2AJ1Q8NGZ0 328 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 AQP3Q92482 292 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 PNPLA2Q96AD5 504 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 IMMP1LQ96LU5 166 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 CDX2Q99626 313 aaPredicted RBP8.94□□□□□ -0.98
VPS53-220ENST00000576149 CHST6Q9GZX3 395 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 CDCP1Q9H5V8 836 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 MOB1AQ9H8S9 216 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 UPB1Q9UBR1 384 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 OPN4Q9UHM6 478 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 GPN3Q9UHW5 284 aaPredicted RBP8.94□□□□□ -0.98
VPS53-220ENST00000576149 POLR1DQ9Y2S0 133 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 AUP1Q9Y679 476 aa8.94□□□□□ -0.98
VPS53-220ENST00000576149 TNRC6BQ9UPQ9 1833 aaKnown RBP8.94□□□□□ -0.98
VPS53-220ENST00000576149 A0A087WZY1 265 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 TMEM235A6NFC5 223 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 WIPF3A6NGB9 483 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 D6RAR5 112 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 STMND1H3BQB6 276 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 RAB27BO00194 218 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 CFDP00746 253 aaPredicted RBP8.93□□□□□ -0.98
VPS53-220ENST00000576149 CD74P04233 296 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 CFIP05156 583 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 UMODP07911 640 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 ZNF735P0CB33 412 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 COX6A1P12074 109 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 TDGF1P13385 188 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 CXCL2P19875 107 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 KLK2P20151 261 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 C4BPBP20851 252 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 HYAL4Q2M3T9 481 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 C2orf68Q2NKX9 166 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 IDO2Q6ZQW0 420 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 TMPPEQ6ZT21 453 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 ACBD4Q8NC06 268 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 MAFAQ8NHW3 353 aaPredicted RBP8.93□□□□□ -0.98
VPS53-220ENST00000576149 SLC25A21Q9BQT8 299 aaPredicted RBP8.93□□□□□ -0.98
VPS53-220ENST00000576149 TINAGL1Q9GZM7 467 aaPredicted RBP8.93□□□□□ -0.98
VPS53-220ENST00000576149 ASH2LQ9UBL3 628 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 UBQLN2Q9UHD9 624 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 KLK13Q9UKR3 277 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 RALGAPA1Q6GYQ0 2036 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 RPS10-NUDT3A0A1W2PQS6 291 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 ZNF726A6NNF4 738 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 ZNF736B4DX44 427 aaPredicted RBP8.93□□□□□ -0.98
VPS53-220ENST00000576149 M0QYG6 137 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 SULT2B1O00204 365 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 NTN3O00634 580 aaPredicted RBP8.93□□□□□ -0.98
VPS53-220ENST00000576149 KLF7O75840 302 aaPredicted RBP8.93□□□□□ -0.98
VPS53-220ENST00000576149 KLK3P07288 261 aaPredicted RBP8.93□□□□□ -0.98
VPS53-220ENST00000576149 QDPRP09417 244 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 RAB3AP20336 220 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 NFYAP23511 347 aaPredicted RBP8.93□□□□□ -0.98
VPS53-220ENST00000576149 PI4KAP42356 2102 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 P2RX3P56373 397 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 SLC35A1P78382 337 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 RIPPLY1Q0D2K3 151 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 UNC119Q13432 240 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 OPCMLQ14982 345 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 ZNF260Q3ZCT1 412 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 IGSF11Q5DX21 431 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 CLLU1Q5K131 121 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 OPN5Q6U736 354 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 GTPBP8Q8N3Z3 284 aaPredicted RBP8.93□□□□□ -0.98
VPS53-220ENST00000576149 OR51E1Q8TCB6 317 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 ELMOD3Q96FG2 381 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 POFUT1Q9H488 388 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 MYOZ1Q9NP98 299 aaPredicted RBP8.93□□□□□ -0.98
VPS53-220ENST00000576149 PNRC2Q9NPJ4 139 aaKnown RBP8.93□□□□□ -0.98
VPS53-220ENST00000576149 SLC5A6Q9Y289 635 aa8.93□□□□□ -0.98
VPS53-220ENST00000576149 TMEM82A0PJX8 343 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 MCRIP1C9JLW8 97 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 F5H5P2 479 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 L7N2F9 121 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 RGS11O94810 467 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 SIX6O95475 246 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 PMS2P2O95744 297 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 AMY2AP04746 511 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 VSIG8P0DPA2 414 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 UBE2MP61081 183 aaKnown RBP8.92□□□□□ -0.98
VPS53-220ENST00000576149 H3F3AP84243 136 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 TRA2AQ13595 282 aaKnown RBP eCLIP8.92□□□□□ -0.98
VPS53-220ENST00000576149 TAF13Q15543 124 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 MPPED2Q15777 294 aa8.92□□□□□ -0.98
VPS53-220ENST00000576149 EXT1Q16394 746 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms