RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CCNB2O95067 398 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 P04436 131 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 ATP1B1P05026 303 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 FCER2P06734 321 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 GSTT2P0CG29 244 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 GSTT2BP0CG30 244 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 ARSBP15848 533 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 GNLYP22749 145 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 NTSP30990 170 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 RPL3P39023 403 aaKnown RBP5.26□□□□□ -1.57
VPS53-212ENST00000572259 FEN1P39748 380 aaKnown RBP5.26□□□□□ -1.57
VPS53-212ENST00000572259 PMS2P3Q13401 168 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 GPR50Q13585 617 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 GK3PQ14409 553 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 HNF4GQ14541 408 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 SNCBQ16143 134 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 SMUG1Q53HV7 270 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 PIGGQ5H8A4 983 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 TCHHL1Q5QJ38 904 aaPredicted RBP5.26□□□□□ -1.57
VPS53-212ENST00000572259 SLX4IPQ5VYV7 408 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 SLC22A10Q63ZE4 541 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 NOXRED1Q6NXP6 359 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 C1orf94Q6P1W5 598 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 SCIMPQ6UWF3 145 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 GFRALQ6UXV0 394 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 RTL4Q6ZR62 310 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 RNF165Q6ZSG1 346 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 SLC35D2Q76EJ3 337 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 DHDDSQ86SQ9 333 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 STX12Q86Y82 276 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 LRRC34Q8IZ02 419 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 LRRC25Q8N386 305 aaPredicted RBP5.26□□□□□ -1.57
VPS53-212ENST00000572259 NATD1Q8N6N6 113 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 MDS2Q8NDY4 140 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 OR10H4Q8NGA5 316 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 OR8J2Q8NGG1 315 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 C16orf78Q8WTQ4 265 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 NTN5Q8WTR8 489 aaPredicted RBP5.26□□□□□ -1.57
VPS53-212ENST00000572259 NR4A3Q92570 626 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 SCMH1Q96GD3 660 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 PPP3R2Q96LZ3 170 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 SIGLEC12Q96PQ1 595 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 KCNA7Q96RP8 456 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 CXorf21Q9HAI6 301 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 LRTM1Q9HBL6 345 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 TEX10Q9NXF1 929 aaPredicted RBP5.26□□□□□ -1.57
VPS53-212ENST00000572259 TAS2R9Q9NYW1 312 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 SLC17A7Q9P2U7 560 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 SLC7A8Q9UHI5 535 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 ZNF229Q9UJW7 825 aa5.26□□□□□ -1.57
VPS53-212ENST00000572259 PTPN13Q12923 2485 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 CACNA1DQ01668 2161 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 WDR91A4D1P6 747 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 C15orf62A8K5M9 175 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 UBFD1O14562 309 aaKnown RBP5.25□□□□□ -1.57
VPS53-212ENST00000572259 TFECO14948 347 aaPredicted RBP5.25□□□□□ -1.57
VPS53-212ENST00000572259 PRKRAO75569 313 aaKnown RBP5.25□□□□□ -1.57
VPS53-212ENST00000572259 LYPLA1O75608 230 aaPredicted RBP5.25□□□□□ -1.57
VPS53-212ENST00000572259 IGKV3-11P04433 115 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 SERPINE1P05121 402 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 H1F0P07305 194 aaKnown RBP5.25□□□□□ -1.57
VPS53-212ENST00000572259 IL3P08700 152 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 LINC00032P0C843 101 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 CNR1P21554 472 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 GTF2E2P29084 291 aaKnown RBP5.25□□□□□ -1.57
VPS53-212ENST00000572259 DUTP33316 252 aaKnown RBP5.25□□□□□ -1.57
VPS53-212ENST00000572259 SOX3P41225 446 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 HTR5AP47898 357 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 NPBWR2P48146 333 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 EFNB2P52799 333 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 SLC18A1P54219 525 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 FOXA1P55317 472 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 ABCE1P61221 599 aaKnown RBP5.25□□□□□ -1.57
VPS53-212ENST00000572259 CX3CL1P78423 397 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 MRPS22P82650 360 aaKnown RBP5.25□□□□□ -1.57
VPS53-212ENST00000572259 PLGLB1Q02325 96 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 SRYQ05066 204 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 STX3Q13277 289 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 CEACAM7Q14002 265 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 CHI3L2Q15782 390 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 ATP6AP1LQ52LC2 224 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 BEND6Q5SZJ8 279 aaPredicted RBP5.25□□□□□ -1.57
VPS53-212ENST00000572259 MORN5Q5VZ52 161 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 ULK3Q6PHR2 472 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 MRPL21Q7Z2W9 205 aaKnown RBP5.25□□□□□ -1.57
VPS53-212ENST00000572259 COX8CQ7Z4L0 72 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 TMEM17Q86X19 198 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 TMEM163Q8TC26 289 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 ZNF675Q8TD23 568 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 TWIST2Q8WVJ9 160 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 EME1Q96AY2 570 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 EXOSC8Q96B26 276 aaKnown RBP5.25□□□□□ -1.57
VPS53-212ENST00000572259 PHF21AQ96BD5 680 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 ZBED6CLQ96FA7 236 aaPredicted RBP5.25□□□□□ -1.57
VPS53-212ENST00000572259 SLC38A2Q96QD8 506 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 FAM173AQ9BQD7 235 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 OPN3Q9H1Y3 402 aaPredicted RBP5.25□□□□□ -1.57
VPS53-212ENST00000572259 VIPAS39Q9H9C1 493 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 FKBP14Q9NWM8 211 aa5.25□□□□□ -1.57
VPS53-212ENST00000572259 TAS2R7Q9NYW3 318 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms