RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 HTRA3P83110 453 aa9.61□□□□□ -0.87
CCDC40-207ENST00000572253 TDGQ13569 410 aa9.61□□□□□ -0.87
CCDC40-207ENST00000572253 NSDHLQ15738 373 aa9.61□□□□□ -0.87
CCDC40-207ENST00000572253 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.61□□□□□ -0.87
CCDC40-207ENST00000572253 ZNF813Q6ZN06 617 aa9.61□□□□□ -0.87
CCDC40-207ENST00000572253 GKN2Q86XP6 184 aa9.61□□□□□ -0.87
CCDC40-207ENST00000572253 KDM8Q8N371 416 aa9.61□□□□□ -0.87
CCDC40-207ENST00000572253 MARCH1Q8TCQ1 289 aa9.61□□□□□ -0.87
CCDC40-207ENST00000572253 TMEM41AQ96HV5 264 aa9.61□□□□□ -0.87
CCDC40-207ENST00000572253 WWTR1Q9GZV5 400 aa9.61□□□□□ -0.87
CCDC40-207ENST00000572253 SHPKQ9UHJ6 478 aa9.61□□□□□ -0.87
CCDC40-207ENST00000572253 CYP8B1Q9UNU6 501 aa9.61□□□□□ -0.87
CCDC40-207ENST00000572253 TO15178 435 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 FGF16O43320 207 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 PET100P0DJ07 73 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 GPR85P60893 370 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 FAM109BQ6ICB4 259 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-207ENST00000572253 H3F3CQ6NXT2 135 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 TMEM88Q6PEY1 159 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 PRSS58Q8IYP2 241 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 ADAD2Q8NCV1 583 aaKnown RBP9.6□□□□□ -0.87
CCDC40-207ENST00000572253 OR52N4Q8NGI2 321 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 OR13C9Q8NGT0 318 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 GAS2L1Q99501 681 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-207ENST00000572253 NUDT16L1Q9BRJ7 211 aaKnown RBP9.6□□□□□ -0.87
CCDC40-207ENST00000572253 C8orf33Q9H7E9 229 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-207ENST00000572253 FREM3P0C091 2139 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 LMX1BO60663 402 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 FASLGP48023 281 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 GABRA4P48169 554 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 OR7A5Q15622 319 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 TMEM128Q5BJH2 165 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 ZNF585AQ6P3V2 769 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 IL34Q6ZMJ4 242 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 H1FNTQ75WM6 255 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-207ENST00000572253 COX15Q7KZN9 410 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 SLC30A7Q8NEW0 376 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 TERB2Q8NHR7 220 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 ST7LQ8TDW4 575 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 RNF133Q8WVZ7 376 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 TMED6Q8WW62 240 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 ASB10Q8WXI3 467 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 ZDHHC12Q96GR4 267 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 BIN3Q9NQY0 253 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 MMP26Q9NRE1 261 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 GSTP1P09211 210 aaKnown RBP9.6□□□□□ -0.87
CCDC40-207ENST00000572253 GIMD1P0DJR0 217 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 VSIG8P0DPA2 414 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 FBLP22087 321 aaKnown RBP9.6□□□□□ -0.87
CCDC40-207ENST00000572253 ABCD3P28288 659 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 ZNF93P35789 620 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-207ENST00000572253 RPL35P42766 123 aaKnown RBP9.6□□□□□ -0.87
CCDC40-207ENST00000572253 GFERP55789 205 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 POU3F1Q03052 451 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-207ENST00000572253 TLE3Q04726 772 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 FMODQ06828 376 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 PNLIPRP3Q17RR3 467 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 TMEM71Q6P5X7 295 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 FBXO46Q6PJ61 603 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-207ENST00000572253 ANGPTL5Q86XS5 388 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 MISPQ8IVT2 679 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 OR6S1Q8NH40 331 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 LMX1AQ8TE12 382 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 SLAMF6Q96DU3 332 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 MVB12AQ96EY5 273 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 MMP17Q9ULZ9 603 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 MEMO1Q9Y316 297 aa9.6□□□□□ -0.87
CCDC40-207ENST00000572253 IGHV5-51A0A0C4DH38 117 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 C17orf51A8MQB3 221 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 ZNF705EA8MWA4 302 aaPredicted RBP9.59□□□□□ -0.87
CCDC40-207ENST00000572253 F8VVB4 439 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 F8VWA3 439 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 MPIG6BO95866 241 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 HOXA1P49639 335 aaPredicted RBP9.59□□□□□ -0.87
CCDC40-207ENST00000572253 HOGA1Q86XE5 327 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 C9orf40Q8IXQ3 194 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 ARRDC1Q8N5I2 433 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 PBOV1Q9GZY1 135 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 UCK1Q9HA47 277 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 TDRD6O60522 2096 aaKnown RBP9.59□□□□□ -0.87
CCDC40-207ENST00000572253 SEC16AO15027 2179 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 OR3A2P47893 321 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 ZP4Q12836 540 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 UNC119Q13432 240 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 GUCA2BQ16661 112 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 PLEKHN1Q494U1 663 aaPredicted RBP9.59□□□□□ -0.87
CCDC40-207ENST00000572253 LDLRAD3Q86YD5 345 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 OR5H2Q8NGV7 314 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 OR2AJ1Q8NGZ0 328 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 RAB3CQ96E17 227 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 METTL8Q9H825 291 aaKnown RBP9.59□□□□□ -0.87
CCDC40-207ENST00000572253 RAB18Q9NP72 206 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 CARHSP1Q9Y2V2 147 aaKnown RBP9.59□□□□□ -0.87
CCDC40-207ENST00000572253 LAMA2P24043 3122 aaKnown RBP9.59□□□□□ -0.87
CCDC40-207ENST00000572253 IGKV3D-11A0A0A0MRZ8 115 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 OR6C76A6NM76 312 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 HLA-DOBP13765 273 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 HSF1Q00613 529 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 ARFRP1Q13795 201 aa9.59□□□□□ -0.87
CCDC40-207ENST00000572253 SGCAQ16586 387 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms