RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CLEC9AQ6UXN8 241 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 PTPMT1Q8WUK0 201 aaPredicted RBP12.96□□□□□ -0.33
VPS35-210ENST00000568784 RNF141Q8WVD5 230 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 RAB3CQ96E17 227 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 ATPIF1Q9UII2 106 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 RAB22AQ9UL26 194 aa12.96□□□□□ -0.33
VPS35-210ENST00000568784 PRAMEF26H0Y7S4 382 aa12.96□□□□□ -0.34
VPS35-210ENST00000568784 CDAP32320 146 aa12.96□□□□□ -0.34
VPS35-210ENST00000568784 SLC37A1P57057 533 aa12.96□□□□□ -0.34
VPS35-210ENST00000568784 SMCO1Q147U7 214 aa12.96□□□□□ -0.34
VPS35-210ENST00000568784 SGCBQ16585 318 aa12.96□□□□□ -0.34
VPS35-210ENST00000568784 SGCAQ16586 387 aa12.96□□□□□ -0.34
VPS35-210ENST00000568784 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.96□□□□□ -0.34
VPS35-210ENST00000568784 C9orf50Q5SZB4 431 aa12.96□□□□□ -0.34
VPS35-210ENST00000568784 OR5D14Q8NGL3 314 aa12.96□□□□□ -0.34
VPS35-210ENST00000568784 OR10Z1Q8NGY1 313 aa12.96□□□□□ -0.34
VPS35-210ENST00000568784 SCARF2Q96GP6 870 aaPredicted RBP12.96□□□□□ -0.34
VPS35-210ENST00000568784 SLCO5A1Q9H2Y9 848 aa12.96□□□□□ -0.34
VPS35-210ENST00000568784 RPS10P5Q9NQ39 176 aa12.96□□□□□ -0.34
VPS35-210ENST00000568784 OBP2AQ9NY56 170 aa12.96□□□□□ -0.34
VPS35-210ENST00000568784 GMEB2Q9UKD1 530 aa12.96□□□□□ -0.34
VPS35-210ENST00000568784 SZT2Q5T011 3432 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 ZNF98A6NK75 572 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 A8MVM7 634 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 ZNF205O95201 554 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 NPBWR1P48145 328 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 FAM180AQ6UWF9 173 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 ADAMTS18Q8TE60 1221 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 TOMM40LQ969M1 308 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 TCTN2Q96GX1 697 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 MED9Q9NWA0 146 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 EHFQ9NZC4 300 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 PURGQ9UJV8 347 aaKnown RBP12.95□□□□□ -0.34
VPS35-210ENST00000568784 MRPS28Q9Y2Q9 187 aaKnown RBP12.95□□□□□ -0.34
VPS35-210ENST00000568784 SNRNP70P08621 437 aaKnown RBP12.95□□□□□ -0.34
VPS35-210ENST00000568784 DHPSP49366 369 aaPredicted RBP12.95□□□□□ -0.34
VPS35-210ENST00000568784 YPEL5P62699 121 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 C1orf53Q5VUE5 145 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 LANCL3Q6ZV70 420 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 EXD3Q8N9H8 876 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 DAZLQ92904 295 aaKnown RBP12.95□□□□□ -0.34
VPS35-210ENST00000568784 FBXO17Q96EF6 278 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 UTP23Q9BRU9 249 aaKnown RBP12.95□□□□□ -0.34
VPS35-210ENST00000568784 LAT2Q9GZY6 243 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 S1PR5Q9H228 398 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 SLC33A1O00400 549 aaPredicted RBP12.95□□□□□ -0.34
VPS35-210ENST00000568784 ACTL6AO96019 429 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 POLR2HP52434 150 aaKnown RBP12.95□□□□□ -0.34
VPS35-210ENST00000568784 LPCAT3Q6P1A2 487 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 OR51T1Q8NGJ9 327 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 ADAT3Q96EY9 351 aaPredicted RBP12.95□□□□□ -0.34
VPS35-210ENST00000568784 CYYR1Q96J86 154 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 CRISPLD2Q9H0B8 497 aa12.95□□□□□ -0.34
VPS35-210ENST00000568784 PRUNE2Q8WUY3 3088 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 SULT2B1O00204 365 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 ZNF354AO60765 605 aaPredicted RBP12.94□□□□□ -0.34
VPS35-210ENST00000568784 SNAPINO95295 136 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 RAB6AP20340 208 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 SERPINA2P20848 420 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 CLRN1P58418 232 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 BHLHE23Q8NDY6 225 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 OR1M1Q8NGA1 313 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 OR51F2Q8NH61 342 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 SLAMF6Q96DU3 332 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 SUSD2Q9UGT4 822 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 KCNK7Q9Y2U2 307 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 TICRRQ7Z2Z1 1910 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 MPTX1A8MV57 137 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 TO15178 435 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 LRP3O75074 770 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 BGLAPP02818 100 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 GABRG2P18507 467 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 MOB3CQ70IA8 216 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 CATSPERDQ86XM0 798 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 SLC22A24Q8N4F4 322 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 OR5AP2Q8NGF4 316 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 CDC6Q99741 560 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 SLC22A11Q9NSA0 550 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 FANCMQ8IYD8 2048 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 F5H5K5 113 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 SOCS1O15524 211 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 ID4P47928 161 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 PRSS12P56730 875 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 SLC26A5P58743 744 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 ASPHD2Q6ICH7 369 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 FAM57BQ71RH2 274 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 CD300LFQ8TDQ1 290 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 GPBAR1Q8TDU6 330 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 TMEM59Q9BXS4 323 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 BIN3Q9NQY0 253 aa12.94□□□□□ -0.34
VPS35-210ENST00000568784 A0A0A6YYH2 397 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 A6NJ64 397 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 CRHP06850 196 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 FBLP22087 321 aaKnown RBP12.93□□□□□ -0.34
VPS35-210ENST00000568784 ZBTB25P24278 435 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 RBMXP38159 391 aaKnown RBP12.93□□□□□ -0.34
VPS35-210ENST00000568784 FZD2Q14332 565 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 PEA15Q15121 130 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 Q6ZS52 159 aa12.93□□□□□ -0.34
VPS35-210ENST00000568784 SLC26A10Q8NG04 563 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms