RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488		A6NIZ1	184 aa		13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	GPX2	P18283	190 aa		13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	RBM34	P42696	430 aa	Known RBP	13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	TAS2R41	P59536	307 aa		13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	RAP1B	P61224	184 aa		13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	RAP1A	P62834	184 aa		13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	AQP6	Q13520	282 aa		13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	OR8G1	Q15617	311 aa		13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	C11orf65	Q8NCR3	313 aa		13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	LIPH	Q8WWY8	451 aa		13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	B9D2	Q9BPU9	175 aa		13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	FAM234A	Q9H0X4	552 aa		13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	RERGL	Q9H628	205 aa		13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	RANBP3	Q9H6Z4	567 aa	Predicted RBP	13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	KCNK9	Q9NPC2	374 aa		13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	HIF3A	Q9Y2N7	669 aa		13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	MED31	Q9Y3C7	131 aa		13.22	□□□□□ -0.29
CLK3-223	ENST00000568488	SACS	Q9NZJ4	4579 aa		13.22	□□□□□ -0.29
CLK3-223	ENST00000568488		A0A1B0GWJ7	208 aa		13.21	□□□□□ -0.29
CLK3-223	ENST00000568488	RER1	O15258	196 aa		13.21	□□□□□ -0.29
CLK3-223	ENST00000568488	KRTAP10-11	P60412	298 aa		13.21	□□□□□ -0.29
CLK3-223	ENST00000568488	COL10A1	Q03692	680 aa		13.21	□□□□□ -0.29
CLK3-223	ENST00000568488	CYP51A1	Q16850	503 aa		13.21	□□□□□ -0.29
CLK3-223	ENST00000568488	C11orf91	Q3C1V1	193 aa		13.21	□□□□□ -0.29
CLK3-223	ENST00000568488	BEND2	Q8NDZ0	799 aa		13.21	□□□□□ -0.29
CLK3-223	ENST00000568488	WFDC9	Q8NEX5	89 aa		13.21	□□□□□ -0.29
CLK3-223	ENST00000568488	SPRYD4	Q8WW59	207 aa	Predicted RBP	13.21	□□□□□ -0.29
CLK3-223	ENST00000568488	RORB	Q92753	470 aa		13.21	□□□□□ -0.29
CLK3-223	ENST00000568488	MAEL	Q96JY0	434 aa	Known RBP	13.21	□□□□□ -0.29
CLK3-223	ENST00000568488	NPFFR1	Q9GZQ6	430 aa		13.21	□□□□□ -0.29
CLK3-223	ENST00000568488	RAB18	Q9NP72	206 aa		13.21	□□□□□ -0.29
CLK3-223	ENST00000568488	C1orf123	Q9NWV4	160 aa		13.21	□□□□□ -0.29
CLK3-223	ENST00000568488	ADARB2-AS1	A8MUL3	147 aa		13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	GRP	P07492	148 aa		13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	ZNF26	P17031	533 aa	Predicted RBP	13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	CA6	P23280	308 aa		13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	STX1B	P61266	288 aa		13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	HABP2	Q14520	560 aa	Predicted RBP	13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	ZNF826P	Q6ZT77	177 aa		13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	FAM90A1	Q86YD7	464 aa		13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	MICU2	Q8IYU8	434 aa		13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	DTX3	Q8N9I9	347 aa		13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	LY6G5B	Q8NDX9	201 aa		13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	OR51G2	Q8NGK0	314 aa		13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	OR51A7	Q8NH64	312 aa		13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	LRRC8C	Q8TDW0	803 aa		13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	SPDL1	Q96EA4	605 aa		13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	CCL13	Q99616	98 aa		13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	THAP1	Q9NVV9	213 aa		13.2	□□□□□ -0.3
CLK3-223	ENST00000568488	RIMS3	Q9UJD0	308 aa		13.2	□□□□□ -0.3
CLK3-223	ENST00000568488		A0A1B0GW55	424 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	hCG_1807616	A0A1W2PRN6	198 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488		A0A1W2PRX2	142 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488		A6NLC8	198 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	SHOX2	O60902	331 aa	Predicted RBP	13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	PEX14	O75381	377 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	IGF2	P01344	180 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	DUX4L2	P0CJ85	424 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	DUX4L3	P0CJ86	424 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	DUX4L4	P0CJ87	422 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	DUX4L5	P0CJ88	424 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	DUX4L6	P0CJ89	424 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	DUX4L7	P0CJ90	424 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	IFI30	P13284	250 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	PIN1	Q13526	163 aa	Predicted RBP	13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	MPP2	Q14168	576 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	GK2	Q14410	553 aa	Predicted RBP	13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	DUX4L9	Q6RFH8	374 aa	Predicted RBP	13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	ZSCAN2	Q7Z7L9	614 aa	Predicted RBP	13.19	□□□□□ -0.3
CLK3-223	ENST00000568488		Q8N7P7	452 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	SLC7A13	Q8TCU3	470 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	C17orf50	Q8WW18	174 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	SLCO4A1	Q96BD0	722 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	TAMM41	Q96BW9	452 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	OR5M11	Q96RB7	305 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	CCDC167	Q9P0B6	97 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	DUX4	Q9UBX2	424 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	AURKC	Q9UQB9	309 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	POLR1D	Q9Y2S0	133 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	SH3GLB1	Q9Y371	365 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	PCDHGB5	Q9Y5G0	923 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	GMEB1	Q9Y692	573 aa		13.19	□□□□□ -0.3
CLK3-223	ENST00000568488	TRAV27	A0A087WT01	109 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	TRBV5-3	A0A0A0MS03	114 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488		E9PQ18	207 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	PF4V1	P10720	104 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	TNFRSF1B	P20333	461 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	PAX6	P26367	422 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	UBE2E1	P51965	193 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	ELF3	P78545	371 aa	Predicted RBP	13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	ACSM1	Q08AH1	577 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	ECH1	Q13011	328 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	MALL	Q13021	153 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	LRRC75B	Q2VPJ9	315 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	BLOC1S3	Q6QNY0	202 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	PGAP1	Q75T13	922 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	MAVS	Q7Z434	540 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	PATL1	Q86TB9	770 aa	Known RBP	13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	FUNDC1	Q8IVP5	155 aa		13.18	□□□□□ -0.3
CLK3-223	ENST00000568488	GCSAM	Q8N6F7	178 aa		13.18	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms