RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 ABHD12BQ7Z5M8 362 aaPredicted RBP17.9■□□□□ 0.46
CLN3-230ENST00000568076 PAQR4Q8N4S7 273 aaPredicted RBP17.9■□□□□ 0.46
CLN3-230ENST00000568076 ESX1Q8N693 406 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 OR13C9Q8NGT0 318 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 PTX4Q96A99 478 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 NABP1Q96AH0 204 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 NPDC1Q9NQX5 325 aaPredicted RBP17.9■□□□□ 0.46
CLN3-230ENST00000568076 ING4Q9UNL4 249 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 WIPF3A6NGB9 483 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 E9PLN8 166 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 PYCARD-AS1I3L0S3 204 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 SMAD9O15198 467 aaKnown RBP17.9■□□□□ 0.46
CLN3-230ENST00000568076 CD3DP04234 171 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 ABOP16442 354 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 FAUP35544 74 aaKnown RBP17.9■□□□□ 0.46
CLN3-230ENST00000568076 LSM6P62312 80 aaKnown RBP17.9■□□□□ 0.46
CLN3-230ENST00000568076 PMPCAQ10713 525 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 ENDOGQ14249 297 aaKnown RBP17.9■□□□□ 0.46
CLN3-230ENST00000568076 FOXL2NBQ6ZUU3 175 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 OR5D14Q8NGL3 314 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 DVL3Q92997 716 aaPredicted RBP17.9■□□□□ 0.46
CLN3-230ENST00000568076 DDA1Q9BW61 102 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 METTL17Q9H7H0 456 aaPredicted RBP17.9■□□□□ 0.46
CLN3-230ENST00000568076 ZMAT3Q9HA38 289 aaKnown RBP17.9■□□□□ 0.46
CLN3-230ENST00000568076 DLL4Q9NR61 685 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 DEPPQ9NTK1 212 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 FOXJ2Q9P0K8 574 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 FOXD3Q9UJU5 478 aaPredicted RBP17.9■□□□□ 0.46
CLN3-230ENST00000568076 NPTNQ9Y639 398 aa17.9■□□□□ 0.46
CLN3-230ENST00000568076 BDP1A6H8Y1 2624 aa17.89■□□□□ 0.45
CLN3-230ENST00000568076 C5orf63A6NC05 138 aa17.89■□□□□ 0.45
CLN3-230ENST00000568076 CDX4O14627 284 aaPredicted RBP17.89■□□□□ 0.45
CLN3-230ENST00000568076 SERPINA7P05543 415 aa17.89■□□□□ 0.45
CLN3-230ENST00000568076 NR2C1P13056 603 aa17.89■□□□□ 0.45
CLN3-230ENST00000568076 MSR1P21757 451 aa17.89■□□□□ 0.45
CLN3-230ENST00000568076 QRFPP83859 136 aa17.89■□□□□ 0.45
CLN3-230ENST00000568076 UNC119Q13432 240 aa17.89■□□□□ 0.45
CLN3-230ENST00000568076 ZNF782Q6ZMW2 699 aaPredicted RBP17.89■□□□□ 0.45
CLN3-230ENST00000568076 BEST3Q8N1M1 668 aa17.89■□□□□ 0.45
CLN3-230ENST00000568076 PSMF1Q92530 271 aa17.89■□□□□ 0.45
CLN3-230ENST00000568076 NELFAQ9H3P2 528 aa17.89■□□□□ 0.45
CLN3-230ENST00000568076 GPR84Q9NQS5 396 aa17.89■□□□□ 0.45
CLN3-230ENST00000568076 NCKAP5O14513 1909 aa17.89■□□□□ 0.45
CLN3-230ENST00000568076 SULT1C2O00338 296 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 LPLP06858 475 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 AKAIN1P0CW23 69 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 RAB3AP20336 220 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 RAB6AP20340 208 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 GALK2Q01415 458 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 SSBP1Q04837 148 aaKnown RBP17.88■□□□□ 0.45
CLN3-230ENST00000568076 FAM57BQ71RH2 274 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 GGNQ86UU5 652 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 SLC22A24Q8N4F4 322 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 ZNF283Q8N7M2 679 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 OR8S1Q8NH09 359 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 RANBP3Q9H6Z4 567 aaPredicted RBP17.88■□□□□ 0.45
CLN3-230ENST00000568076 MGAT4AQ9UM21 535 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 DHHO43323 396 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 VSIG10L2P0DP72 767 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 CCL1P22362 96 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 GRB2P62993 217 aaKnown RBP17.88■□□□□ 0.45
CLN3-230ENST00000568076 RBMS2Q15434 407 aaKnown RBP17.88■□□□□ 0.45
CLN3-230ENST00000568076 NAA40Q86UY6 237 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 COMMD2Q86X83 199 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 GABRG1Q8N1C3 465 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 ACBD4Q8NC06 268 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 OR51S1Q8NGJ8 323 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 OR14L1PQ8NHC6 308 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 ZNF431Q8TF32 576 aaPredicted RBP17.88■□□□□ 0.45
CLN3-230ENST00000568076 ZNF775Q96BV0 537 aaPredicted RBP17.88■□□□□ 0.45
CLN3-230ENST00000568076 ZNF837Q96EG3 531 aaPredicted RBP17.88■□□□□ 0.45
CLN3-230ENST00000568076 MED30Q96HR3 178 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 UQCC2Q9BRT2 126 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 GINS4Q9BRT9 223 aa17.88■□□□□ 0.45
CLN3-230ENST00000568076 A0A0A6YYH2 397 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 A6NJ64 397 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 GJE1A6NN92 205 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 F10P00742 488 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 IL5P05113 134 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 VSIG8P0DPA2 414 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 ZNF20P17024 532 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 CTSSP25774 331 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 SUCLG1P53597 346 aaKnown RBP17.87■□□□□ 0.45
CLN3-230ENST00000568076 RAC3P60763 192 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 ZNF626Q68DY1 528 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 STEAP1BQ6NZ63 245 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 OR5AS1Q8N127 324 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 NKD1Q969G9 470 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 FAM71F1Q96KD3 344 aaPredicted RBP17.87■□□□□ 0.45
CLN3-230ENST00000568076 ZNF436Q9C0F3 470 aaPredicted RBP17.87■□□□□ 0.45
CLN3-230ENST00000568076 B3GNT4Q9C0J1 378 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 RAB22AQ9UL26 194 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 SLC5A6Q9Y289 635 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 KIAA1549Q9HCM3 1950 aa17.87■□□□□ 0.45
CLN3-230ENST00000568076 PINLYPA6NC86 204 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 G3V3Q6 166 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 RAB27BO00194 218 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 TNFRSF10AO00220 468 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 NTF4P34130 210 aa17.86■□□□□ 0.45
CLN3-230ENST00000568076 ACTBP60709 375 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms