RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 SNX33Q8WV41 574 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 SPTSSAQ969W0 71 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 HAVCR1Q96D42 359 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 CMBLQ96DG6 245 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 COG8Q96MW5 612 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 IL4I1Q96RQ9 567 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 TEAD3Q99594 435 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 KCNJ15Q99712 375 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 RHNO1Q9BSD3 238 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 COPS4Q9BT78 406 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 C9orf16Q9BUW7 83 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 ADGRL4Q9HBW9 690 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 MSL2Q9HCI7 577 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 NKIRAS2Q9NYR9 191 aa8.34□□□□□ -1.07
CLK3-220ENST00000567992 CGGBP1Q9UFW8 167 aaPredicted RBP8.34□□□□□ -1.07
CLK3-220ENST00000567992 A0A1B0GWJ7 208 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 DLGAP1O14490 977 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 TIMM8AO60220 97 aaPredicted RBP8.33□□□□□ -1.08
CLK3-220ENST00000567992 LCATP04180 440 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 LYNP07948 512 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 ERCC1P07992 297 aaPredicted RBP8.33□□□□□ -1.08
CLK3-220ENST00000567992 SLC2A1P11166 492 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 SLC25A16P16260 332 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 ALOX5APP20292 161 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 COL8A2P25067 703 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 NR4A2P43354 598 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 CX3CR1P49238 355 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 ZNF81P51508 661 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 PRKXP51817 358 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 HCCSP53701 268 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 RPS7P62081 194 aaKnown RBP8.33□□□□□ -1.08
CLK3-220ENST00000567992 GRB2P62993 217 aaKnown RBP8.33□□□□□ -1.08
CLK3-220ENST00000567992 CCL8P80075 99 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 MRPS11P82912 194 aaKnown RBP8.33□□□□□ -1.08
CLK3-220ENST00000567992 HNRNPA0Q13151 305 aaKnown RBP8.33□□□□□ -1.08
CLK3-220ENST00000567992 CDK5R2Q13319 367 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 MOGQ16653 247 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 PCGF3Q3KNV8 242 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 ZIK1Q3SY52 487 aaPredicted RBP8.33□□□□□ -1.08
CLK3-220ENST00000567992 GLYATL3Q5SZD4 288 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 LCN1P1Q5VSP4 162 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 OR2T2Q6IF00 324 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 RHOUQ7L0Q8 258 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 MEPCEQ7L2J0 689 aaKnown RBP8.33□□□□□ -1.08
CLK3-220ENST00000567992 SHFQ7M4L6 423 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 SLC16A9Q7RTY1 509 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 ZNF454Q8N9F8 522 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 OR5L1Q8NGL2 311 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 UBE2FQ969M7 185 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 HRASLS5Q96KN8 279 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 BPESC1Q9GZL8 116 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 TOR3AQ9H497 397 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 CYSLTR2Q9NS75 346 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 CENPMQ9NSP4 180 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 GPR160Q9UJ42 338 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 COPS3Q9UNS2 423 aa8.33□□□□□ -1.08
CLK3-220ENST00000567992 FN1P02751 2386 aaKnown RBP8.33□□□□□ -1.08
CLK3-220ENST00000567992 IGHV4-61A0A0C4DH41 118 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 PLSCR5A0PG75 271 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 SLC22A31A6NKX4 558 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 IQCF6A8MYZ5 107 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 MLNRO43193 412 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 SPRY3O43610 288 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 BAG2O95816 211 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 LY6G6DO95868 133 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 MT-ND5P03915 603 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 HEXAP06865 529 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 CD55P08174 381 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 GABRB1P18505 474 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 ACHEP22303 614 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 LIPAP38571 399 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 SLC6A9P48067 706 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 RAD23AP54725 363 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 ZNF92Q03936 586 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 LOXL1Q08397 574 aaPredicted RBP8.32□□□□□ -1.08
CLK3-220ENST00000567992 RCN1Q15293 331 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 CARTPTQ16568 116 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 TSTQ16762 297 aaKnown RBP8.32□□□□□ -1.08
CLK3-220ENST00000567992 FAM209AQ5JX71 171 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 LRRN1Q6UXK5 716 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 GID4Q8IVV7 300 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 OR5AS1Q8N127 324 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 OR8J1Q8NGP2 316 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 OR2AE1Q8NHA4 323 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 FAM81AQ8TBF8 368 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 RDH5Q92781 318 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 STMN2Q93045 179 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 SPSB4Q96A44 273 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 EME1Q96AY2 570 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 ZNF582Q96NG8 517 aaPredicted RBP8.32□□□□□ -1.08
CLK3-220ENST00000567992 CNN2Q99439 309 aaKnown RBP8.32□□□□□ -1.08
CLK3-220ENST00000567992 PIMREGQ9BSJ6 248 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 YIPF3Q9GZM5 350 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 HAO2Q9NYQ3 351 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 DNAJC27Q9NZQ0 273 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 ZNF319Q9P2F9 582 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 ZDHHC8Q9ULC8 765 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 CACNG2Q9Y698 323 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 ABCA1O95477 2261 aa8.32□□□□□ -1.08
CLK3-220ENST00000567992 CUBNO60494 3623 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms