RNA–Protein interactions for RNA: ENST00000566843.1

COMMD4-215, Transcript of COMM domain containing 4, human

TSL 2

Gene COMMD4, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-215	ENST00000566843	ZNF704	Q6ZNC4	412 aa	Predicted RBP	14	□□□□□ -0.17
COMMD4-215	ENST00000566843	FAM160A2	Q8N612	972 aa	Predicted RBP	14	□□□□□ -0.17
COMMD4-215	ENST00000566843	CHST4	Q8NCG5	386 aa		14	□□□□□ -0.17
COMMD4-215	ENST00000566843	ZNF563	Q8TA94	476 aa		14	□□□□□ -0.17
COMMD4-215	ENST00000566843	NKD1	Q969G9	470 aa		14	□□□□□ -0.17
COMMD4-215	ENST00000566843	CPNE2	Q96FN4	548 aa	Predicted RBP	14	□□□□□ -0.17
COMMD4-215	ENST00000566843	CNTD2	Q9H8S5	307 aa		14	□□□□□ -0.17
COMMD4-215	ENST00000566843	FAM60A	Q9NP50	221 aa		14	□□□□□ -0.17
COMMD4-215	ENST00000566843	HRASLS2	Q9NWW9	162 aa		14	□□□□□ -0.17
COMMD4-215	ENST00000566843	FBLN5	Q9UBX5	448 aa		14	□□□□□ -0.17
COMMD4-215	ENST00000566843	OR52A1	Q9UKL2	312 aa		14	□□□□□ -0.17
COMMD4-215	ENST00000566843	GPR132	Q9UNW8	380 aa		14	□□□□□ -0.17
COMMD4-215	ENST00000566843		A0A0A6YYC8	382 aa	Predicted RBP	13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	C1orf196	B1AJZ1	125 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843		I3L1I5	382 aa	Predicted RBP	13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	LMX1B	O60663	402 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	ICOSLG	O75144	302 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	UTS2	O95399	124 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	S100A9	P06702	114 aa	Known RBP	13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	HAAO	P46952	286 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	EIF5A	P63241	154 aa	Known RBP	13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	SGCB	Q16585	318 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	FAM209B	Q5JX69	171 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	TMEM244	Q5VVB8	128 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	SLC16A13	Q7RTY0	426 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	MAMDC2	Q7Z304	686 aa	Predicted RBP	13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	TMEM230	Q96A57	120 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	OR5B2	Q96R09	309 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	TXNIP	Q9H3M7	391 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	ZNF576	Q9H609	170 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	OR5AC2	Q9NZP5	309 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	EMC9	Q9Y3B6	208 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	PLG	P00747	810 aa	Predicted RBP	13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	IGHM	P01871	453 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	CSTB	P04080	98 aa	Known RBP	13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	LPAR6	P43657	344 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	SLC6A8	P48029	635 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	PRTG	Q2VWP7	1150 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	C1QL3	Q5VWW1	255 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	TANGO2	Q6ICL3	276 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	RBMS3	Q6XE24	437 aa	Known RBP	13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	TERB2	Q8NHR7	220 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	ROBO4	Q8WZ75	1007 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	SLC39A7	Q92504	469 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	HIST1H2BA	Q96A08	127 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843	TIMM10B	Q9Y5J6	103 aa		13.99	□□□□□ -0.17
COMMD4-215	ENST00000566843		H0Y8X5	98 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	TNFRSF10C	O14798	259 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	MT-ATP6	P00846	226 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	PMP2	P02689	132 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	RCC1	P18754	421 aa	Predicted RBP	13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	AGA	P20933	346 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	GALNS	P34059	522 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	HGFAC	Q04756	655 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	IL15RA	Q13261	267 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	ERV3-1	Q14264	604 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	SMCO1	Q147U7	214 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	ELAVL1	Q15717	326 aa	Known RBP	13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	SLC29A4	Q7RTT9	530 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	MARCH3	Q86UD3	253 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	KDF1	Q8NAX2	398 aa	Predicted RBP	13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	ADAMTS18	Q8TE60	1221 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	BMF	Q96LC9	184 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	CACFD1	Q9UGQ2	172 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	FLVCR1	Q9Y5Y0	555 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	CPAMD8	Q8IZJ3	1885 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	CLDN4	O14493	209 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	TAAR5	O14804	337 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	YKT6	O15498	198 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	PRKN	O60260	465 aa	Predicted RBP	13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	EIF1B	O60739	113 aa	Known RBP	13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	DXO	O77932	396 aa	Known RBP	13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	VSIG8	P0DPA2	414 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	ZNF44	P15621	663 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	EIF1	P41567	113 aa	Known RBP	13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	SULT1A2	P50226	295 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	F2RL1	P55085	397 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	PPP1CA	P62136	330 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	EIF2S3L	Q2VIR3	472 aa	Known RBP	13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	DEFB110	Q30KQ9	67 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	VAX1	Q5SQQ9	334 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	EIF5AL1	Q6IS14	154 aa	Known RBP	13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	NAA40	Q86UY6	237 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	BHLHE23	Q8NDY6	225 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	OR4K15	Q8NH41	348 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	PATE1	Q8WXA2	126 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	TCEAL3	Q969E4	200 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	C5orf66	Q9H5L9	145 aa		13.98	□□□□□ -0.17
COMMD4-215	ENST00000566843	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	13.97	□□□□□ -0.17
COMMD4-215	ENST00000566843		C9JQL5	133 aa		13.97	□□□□□ -0.17
COMMD4-215	ENST00000566843	GNB3	P16520	340 aa		13.97	□□□□□ -0.17
COMMD4-215	ENST00000566843	CXCR1	P25024	350 aa		13.97	□□□□□ -0.17
COMMD4-215	ENST00000566843	PMEL	P40967	661 aa		13.97	□□□□□ -0.17
COMMD4-215	ENST00000566843	BIK	Q13323	160 aa		13.97	□□□□□ -0.17
COMMD4-215	ENST00000566843	RBM39	Q14498	530 aa	Known RBP	13.97	□□□□□ -0.17
COMMD4-215	ENST00000566843	CLEC18B	Q6UXF7	455 aa		13.97	□□□□□ -0.17
COMMD4-215	ENST00000566843	LILRB2	Q8N423	598 aa		13.97	□□□□□ -0.17
COMMD4-215	ENST00000566843	ZNF561	Q8N587	486 aa		13.97	□□□□□ -0.17
COMMD4-215	ENST00000566843	C14orf79	Q96F83	325 aa		13.97	□□□□□ -0.17
COMMD4-215	ENST00000566843	CDCA3	Q99618	268 aa	Predicted RBP	13.97	□□□□□ -0.17

Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms