RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 CYB5R1Q9UHQ9 305 aa15.68■□□□□ 0.1
CLN3-218ENST00000565688 KCNG2Q9UJ96 466 aa15.68■□□□□ 0.1
CLN3-218ENST00000565688 TMCC3Q9ULS5 477 aa15.68■□□□□ 0.1
CLN3-218ENST00000565688 NOP16Q9Y3C1 178 aaKnown RBP15.68■□□□□ 0.1
CLN3-218ENST00000565688 IGHV2-70DA0A0C4DH43 119 aa15.67■□□□□ 0.1
CLN3-218ENST00000565688 ZNF205O95201 554 aa15.67■□□□□ 0.1
CLN3-218ENST00000565688 HLA-DQA2P01906 255 aa15.67■□□□□ 0.1
CLN3-218ENST00000565688 TRAP1Q12931 704 aaKnown RBP15.67■□□□□ 0.1
CLN3-218ENST00000565688 SAMD4BQ5PRF9 694 aaKnown RBP15.67■□□□□ 0.1
CLN3-218ENST00000565688 SHISA2Q6UWI4 295 aa15.67■□□□□ 0.1
CLN3-218ENST00000565688 C9orf139Q6ZV77 190 aa15.67■□□□□ 0.1
CLN3-218ENST00000565688 LINC00346Q8IVM7 164 aa15.67■□□□□ 0.1
CLN3-218ENST00000565688 BCL6BQ8N143 479 aaPredicted RBP15.67■□□□□ 0.1
CLN3-218ENST00000565688 OR8B3Q8NGG8 313 aa15.67■□□□□ 0.1
CLN3-218ENST00000565688 OR11L1Q8NGX0 322 aa15.67■□□□□ 0.1
CLN3-218ENST00000565688 RAB40AQ8WXH6 277 aa15.67■□□□□ 0.1
CLN3-218ENST00000565688 SLC25A28Q96A46 364 aa15.67■□□□□ 0.1
CLN3-218ENST00000565688 OR8B2Q96RD0 313 aa15.67■□□□□ 0.1
CLN3-218ENST00000565688 OR6C68A6NDL8 312 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 CLDN34H7C241 214 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 LCATP04180 440 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 HLA-DPB1P04440 258 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 FABP3P05413 133 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 GGT2P36268 569 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 GSSP48637 474 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 PITPNBP48739 271 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 TPTEP56180 551 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 ZNF620Q6ZNG0 422 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 PGAP1Q75T13 922 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 PARP8Q8N3A8 854 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 Q8TCH9 128 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 GNPDA2Q8TDQ7 276 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 UPRTQ96BW1 309 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 NSMCE2Q96MF7 247 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 SLC22A4Q9H015 551 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 NSRP1Q9H0G5 558 aaKnown RBP15.66■□□□□ 0.1
CLN3-218ENST00000565688 IL1RAPQ9NPH3 570 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 PCDHGB1Q9Y5G3 927 aa15.66■□□□□ 0.1
CLN3-218ENST00000565688 IGHV3-64DA0A0J9YX35 117 aa15.65■□□□□ 0.1
CLN3-218ENST00000565688 RNASE1P07998 156 aaKnown RBP15.65■□□□□ 0.1
CLN3-218ENST00000565688 ZNF823P16415 610 aa15.65■□□□□ 0.1
CLN3-218ENST00000565688 CD200P41217 278 aa15.65■□□□□ 0.1
CLN3-218ENST00000565688 TSPAN31Q12999 210 aa15.65■□□□□ 0.1
CLN3-218ENST00000565688 RPL13AP3Q6NVV1 102 aa15.65■□□□□ 0.1
CLN3-218ENST00000565688 DCDC5Q6ZRR9 648 aa15.65■□□□□ 0.1
CLN3-218ENST00000565688 MRPL21Q7Z2W9 205 aaKnown RBP15.65■□□□□ 0.1
CLN3-218ENST00000565688 PGAM4Q8N0Y7 254 aa15.65■□□□□ 0.1
CLN3-218ENST00000565688 SDR9C7Q8NEX9 313 aa15.65■□□□□ 0.1
CLN3-218ENST00000565688 SPRYD4Q8WW59 207 aaPredicted RBP15.65■□□□□ 0.1
CLN3-218ENST00000565688 SPTSSAQ969W0 71 aa15.65■□□□□ 0.1
CLN3-218ENST00000565688 DACT3Q96B18 629 aaPredicted RBP15.65■□□□□ 0.1
CLN3-218ENST00000565688 SLCO4A1Q96BD0 722 aa15.65■□□□□ 0.1
CLN3-218ENST00000565688 ZNF48Q96MX3 618 aaPredicted RBP15.65■□□□□ 0.1
CLN3-218ENST00000565688 DUX5Q96PT3 197 aa15.65■□□□□ 0.1
CLN3-218ENST00000565688 PNRC2Q9NPJ4 139 aaKnown RBP15.65■□□□□ 0.1
CLN3-218ENST00000565688 CLN8Q9UBY8 286 aa15.65■□□□□ 0.1
CLN3-218ENST00000565688 KIR2DS1A0A191URI9 304 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 M0R135 149 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 PHYHO14832 338 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 ARPC2O15144 300 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 KRT36O76013 467 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 PLATP00750 562 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 IGHV4-38-2P0DP08 117 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 RRM2P31350 389 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 PMELP40967 661 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 RAD23AP54725 363 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.64■□□□□ 0.09
CLN3-218ENST00000565688 MAB21L1Q13394 359 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 SPATS1Q496A3 300 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 OR52L1Q8NGH7 329 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 ZNF799Q96GE5 643 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 C1orf147Q96MC9 270 aaPredicted RBP15.64■□□□□ 0.09
CLN3-218ENST00000565688 FAM107BQ9H098 131 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 FN3KQ9H479 309 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 MRPL22Q9NWU5 206 aaKnown RBP15.64■□□□□ 0.09
CLN3-218ENST00000565688 CD300AQ9UGN4 299 aa15.64■□□□□ 0.09
CLN3-218ENST00000565688 SNX3O60493 162 aa15.63■□□□□ 0.09
CLN3-218ENST00000565688 IL13RA1P78552 427 aa15.63■□□□□ 0.09
CLN3-218ENST00000565688 OR8G1Q15617 311 aa15.63■□□□□ 0.09
CLN3-218ENST00000565688 KCNJ8Q15842 424 aa15.63■□□□□ 0.09
CLN3-218ENST00000565688 SLC35F1Q5T1Q4 408 aa15.63■□□□□ 0.09
CLN3-218ENST00000565688 PGBD2Q6P3X8 592 aa15.63■□□□□ 0.09
CLN3-218ENST00000565688 NAA40Q86UY6 237 aa15.63■□□□□ 0.09
CLN3-218ENST00000565688 LINC00471Q8N535 108 aa15.63■□□□□ 0.09
CLN3-218ENST00000565688 PLPP7Q8NBV4 271 aa15.63■□□□□ 0.09
CLN3-218ENST00000565688 OR2T4Q8NH00 348 aa15.63■□□□□ 0.09
CLN3-218ENST00000565688 MAP6Q96JE9 813 aa15.63■□□□□ 0.09
CLN3-218ENST00000565688 NUDT16L1Q9BRJ7 211 aaKnown RBP15.63■□□□□ 0.09
CLN3-218ENST00000565688 FN3KRPQ9HA64 309 aa15.63■□□□□ 0.09
CLN3-218ENST00000565688 CDH10Q9Y6N8 788 aa15.63■□□□□ 0.09
CLN3-218ENST00000565688 CD300LBA8K4G0 201 aa15.62■□□□□ 0.09
CLN3-218ENST00000565688 TMPRSS2O15393 492 aa15.62■□□□□ 0.09
CLN3-218ENST00000565688 GMDSO60547 372 aa15.62■□□□□ 0.09
CLN3-218ENST00000565688 FAM20BO75063 409 aa15.62■□□□□ 0.09
CLN3-218ENST00000565688 NPY4RP50391 375 aa15.62■□□□□ 0.09
CLN3-218ENST00000565688 PRSS12P56730 875 aa15.62■□□□□ 0.09
CLN3-218ENST00000565688 BPIFB3P59826 476 aa15.62■□□□□ 0.09
CLN3-218ENST00000565688 DBPQ10586 325 aaPredicted RBP15.62■□□□□ 0.09
CLN3-218ENST00000565688 SLC9A3R2Q15599 337 aa15.62■□□□□ 0.09
CLN3-218ENST00000565688 CLEC12AQ5QGZ9 265 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms