RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 RAP2AP10114 183 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 CLUP10909 449 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 GATA3P23771 443 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 PRSS12P56730 875 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 SEC61A1P61619 476 aaKnown RBP12.49□□□□□ -0.41
CLN3-213ENST00000565047 BTG1P62324 171 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 LCN2P80188 198 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 PAX2Q02962 417 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 ZNF181Q2M3W8 571 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 LIPNQ5VXI9 398 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 C1QL2Q7Z5L3 287 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 TMEM179BQ7Z7N9 219 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 PEG10Q86TG7 708 aaKnown RBP12.49□□□□□ -0.41
CLN3-213ENST00000565047 ZNF511Q8NB15 262 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 OR51L1Q8NGJ5 315 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 OR2AJ1Q8NGZ0 328 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 OR2T4Q8NH00 348 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 ST7LQ8TDW4 575 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 POP5Q969H6 163 aaKnown RBP12.49□□□□□ -0.41
CLN3-213ENST00000565047 REPIN1Q9BWE0 567 aaKnown RBP12.49□□□□□ -0.41
CLN3-213ENST00000565047 CHID1Q9BWS9 393 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 CDADC1Q9BWV3 514 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 HCAR1Q9BXC0 346 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 TMEM165Q9HC07 324 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 ARMC1Q9NVT9 282 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 SAMHD1Q9Y3Z3 626 aaKnown RBP12.49□□□□□ -0.41
CLN3-213ENST00000565047 COMMD3-BMI1R4GMX3 469 aa12.49□□□□□ -0.41
CLN3-213ENST00000565047 ISPDA4D126 451 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 A8MXK9 166 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 F5H5P2 479 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 DYNC1I1O14576 645 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 SOX14O95416 240 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 HLA-DQA2P01906 255 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 HLA-DPB1P04440 258 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 GYPBP06028 91 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 SPI1P17947 270 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 GATA4P43694 442 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 RAD23AP54725 363 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 GK3PQ14409 553 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 SNAI3Q3KNW1 292 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 FAM98BQ52LJ0 330 aaKnown RBP12.48□□□□□ -0.41
CLN3-213ENST00000565047 DCAF12L2Q5VW00 463 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 USP43Q70EL4 1123 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 ZNF771Q7L3S4 317 aaPredicted RBP12.48□□□□□ -0.41
CLN3-213ENST00000565047 ATG16L2Q8NAA4 619 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 DEFB108BQ8NET1 73 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 PROKR2Q8NFJ6 384 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 OR2T33Q8NG76 320 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 OR9Q1Q8NGQ5 310 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 ZNF420Q8TAQ5 688 aaPredicted RBP12.48□□□□□ -0.41
CLN3-213ENST00000565047 DACT3Q96B18 629 aaPredicted RBP12.48□□□□□ -0.41
CLN3-213ENST00000565047 SLCO4A1Q96BD0 722 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 FEVQ99581 238 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 REEP1Q9H902 201 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 TBC1D23Q9NUY8 699 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 TMEM100Q9NV29 134 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 UBAP1Q9NZ09 502 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 BAIAP2Q9UQB8 552 aa12.48□□□□□ -0.41
CLN3-213ENST00000565047 ARRDC5A6NEK1 342 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 IFNL4K9M1U5 179 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 M0R135 149 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 FOXH1O75593 365 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 PTBP3O95758 552 aaKnown RBP12.47□□□□□ -0.41
CLN3-213ENST00000565047 LCATP04180 440 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 WNT2P09544 360 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 ZNF823P16415 610 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 SELEP16581 610 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 ADRA2CP18825 462 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 TPTEP56180 551 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 ZNF92Q03936 586 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 DCXRQ7Z4W1 244 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 SPICQ8N5J4 248 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 CELF2-AS1Q8N7Q2 184 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 BHLHE23Q8NDY6 225 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 OR10G2Q8NGC3 310 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 ZFAND2BQ8WV99 257 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 CANT1Q8WVQ1 401 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 DVL3Q92997 716 aaPredicted RBP12.47□□□□□ -0.41
CLN3-213ENST00000565047 SLC7A6OSQ96CW6 309 aaPredicted RBP12.47□□□□□ -0.41
CLN3-213ENST00000565047 ZNF799Q96GE5 643 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 THTPAQ9BU02 230 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 CMC2Q9NRP2 79 aa12.47□□□□□ -0.41
CLN3-213ENST00000565047 AQP12BA6NM10 295 aa12.46□□□□□ -0.41
CLN3-213ENST00000565047 CEACAM18A8MTB9 384 aa12.46□□□□□ -0.41
CLN3-213ENST00000565047 ZNF593O00488 134 aaPredicted RBP12.46□□□□□ -0.41
CLN3-213ENST00000565047 CYB5R3P00387 301 aaPredicted RBP12.46□□□□□ -0.41
CLN3-213ENST00000565047 ZNF12P17014 697 aa12.46□□□□□ -0.41
CLN3-213ENST00000565047 EPHA1P21709 976 aa12.46□□□□□ -0.41
CLN3-213ENST00000565047 FMO3P31513 532 aa12.46□□□□□ -0.41
CLN3-213ENST00000565047 MDH2P40926 338 aaKnown RBP12.46□□□□□ -0.41
CLN3-213ENST00000565047 CD200P41217 278 aa12.46□□□□□ -0.41
CLN3-213ENST00000565047 SRP9P49458 86 aaKnown RBP12.46□□□□□ -0.41
CLN3-213ENST00000565047 ENTPD1P49961 510 aa12.46□□□□□ -0.41
CLN3-213ENST00000565047 HILS1P60008 231 aa12.46□□□□□ -0.41
CLN3-213ENST00000565047 DRAM2Q6UX65 266 aa12.46□□□□□ -0.41
CLN3-213ENST00000565047 PRSS45Q7RTY3 260 aa12.46□□□□□ -0.41
CLN3-213ENST00000565047 AQP12AQ8IXF9 295 aa12.46□□□□□ -0.41
CLN3-213ENST00000565047 Q8TCH9 128 aa12.46□□□□□ -0.41
CLN3-213ENST00000565047 CCDC124Q96CT7 223 aaKnown RBP12.46□□□□□ -0.41
CLN3-213ENST00000565047 SLAMF6Q96DU3 332 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms