RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 SPARTQ8N0X7 666 aa17.82■□□□□ 0.44
CLN3-212ENST00000564574 NUP37Q8NFH4 326 aa17.82■□□□□ 0.44
CLN3-212ENST00000564574 TSPAN14Q8NG11 270 aa17.82■□□□□ 0.44
CLN3-212ENST00000564574 OR52H1Q8NGJ2 320 aa17.82■□□□□ 0.44
CLN3-212ENST00000564574 RORBQ92753 470 aa17.82■□□□□ 0.44
CLN3-212ENST00000564574 TRIM36Q9NQ86 728 aa17.82■□□□□ 0.44
CLN3-212ENST00000564574 LSM2Q9Y333 95 aaKnown RBP17.82■□□□□ 0.44
CLN3-212ENST00000564574 A6NNC1 897 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 ATP6V1G2-DDX39BF2Z307 99 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 LOC110117498-PIK3R3F6TDL0 507 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 SMPD2O60906 423 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 TGM4P49221 684 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 TAS2R43P59537 309 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 RPS23P62266 143 aaKnown RBP17.81■□□□□ 0.44
CLN3-212ENST00000564574 BDH1Q02338 343 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 SPOCK1Q08629 439 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 ACSM1Q08AH1 577 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 CCDC58Q4VC31 144 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 SLC22A25Q6T423 547 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 PRSS45Q7RTY3 260 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 OR5L1Q8NGL2 311 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 GATAD2BQ8WXI9 593 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 FCGR1BQ92637 280 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 PGAM5Q96HS1 289 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 TMEM204Q9BSN7 226 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 ACOT13Q9NPJ3 140 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 NUFIP1Q9UHK0 495 aaKnown RBP17.81■□□□□ 0.44
CLN3-212ENST00000564574 MAST4O15021 2626 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 DOPEY2Q9Y3R5 2298 aa17.81■□□□□ 0.44
CLN3-212ENST00000564574 LRRK2Q5S007 2527 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 COL12A1Q99715 3063 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 MAGEA13PA6NCF6 341 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 PNPP00491 289 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 PSMB10P40306 273 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 CCR9P51686 369 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 NKX6-1P78426 367 aaPredicted RBP17.8■□□□□ 0.44
CLN3-212ENST00000564574 EMX1Q04741 257 aaPredicted RBP17.8■□□□□ 0.44
CLN3-212ENST00000564574 SPHARQ15513 63 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 RPL22L1Q6P5R6 122 aaKnown RBP17.8■□□□□ 0.44
CLN3-212ENST00000564574 FAM57BQ71RH2 274 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 ZNF367Q7RTV3 350 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 NAA40Q86UY6 237 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 CATSPERDQ86XM0 798 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 KLBQ86Z14 1044 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 ZNF101Q8IZC7 436 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 ABHD4Q8TB40 342 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 PBOV1Q9GZY1 135 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 OR10A2Q9H208 303 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 ISYNA1Q9NPH2 558 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 G6PC2Q9NQR9 355 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 OR52A1Q9UKL2 312 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 ICE1Q9Y2F5 2266 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 CADP27708 2225 aa17.8■□□□□ 0.44
CLN3-212ENST00000564574 SHISA9B4DS77 424 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 XRCC2O43543 280 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 FAM157BP0CG42 384 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 SLC2A1P11166 492 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 GLRXP35754 106 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 MAP2K4P45985 399 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 MFGE8Q08431 387 aaPredicted RBP17.79■□□□□ 0.44
CLN3-212ENST00000564574 MALLQ13021 153 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 SNTB2Q13425 540 aaKnown RBP17.79■□□□□ 0.44
CLN3-212ENST00000564574 ALKBH1Q13686 389 aaKnown RBP17.79■□□□□ 0.44
CLN3-212ENST00000564574 MED22Q15528 200 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 BCL2L15Q5TBC7 163 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 ADAM5Q6NVV9 412 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 RFPL4BQ6ZWI9 263 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 OR1J1Q8NGS3 322 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 OR2G2Q8NGZ5 317 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 RNF166Q96A37 237 aaPredicted RBP17.79■□□□□ 0.44
CLN3-212ENST00000564574 OR5M11Q96RB7 305 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 RGCCQ9H4X1 137 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 BRD7Q9NPI1 651 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 PLEKHB1Q9UF11 243 aaPredicted RBP17.79■□□□□ 0.44
CLN3-212ENST00000564574 ZNF391Q9UJN7 358 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 GTF2A1LQ9UNN4 478 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 ATP23Q9Y6H3 246 aa17.79■□□□□ 0.44
CLN3-212ENST00000564574 FAM221AA4D161 298 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 TRIM64CA6NLI5 447 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 H3BSA7 217 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 TBX1O43435 398 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 NGFP01138 241 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 PCMT1P22061 227 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 PPP1CBP62140 327 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 SNAI3Q3KNW1 292 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 ELMOD2Q8IZ81 293 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 OR8B12Q8NGG6 310 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 HS3ST6Q96QI5 342 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 OPA3Q9H6K4 179 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 ZNF442Q9H7R0 627 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 VCX3AQ9NNX9 186 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 POU2F3Q9UKI9 436 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 STARD10Q9Y365 291 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 N6AMT1Q9Y5N5 214 aa17.78■□□□□ 0.44
CLN3-212ENST00000564574 A0A0U1RQV5 110 aa17.77■□□□□ 0.44
CLN3-212ENST00000564574 VSTM5A8MXK1 200 aa17.77■□□□□ 0.44
CLN3-212ENST00000564574 E9PI62 339 aa17.77■□□□□ 0.44
CLN3-212ENST00000564574 OGG1O15527 345 aa17.77■□□□□ 0.44
CLN3-212ENST00000564574 LALBAP00709 142 aa17.77■□□□□ 0.44
CLN3-212ENST00000564574 LCKP06239 509 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms