RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 H3F3CQ6NXT2 135 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 PRMT9Q6P2P2 845 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 ULK3Q6PHR2 472 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 NPSR1Q6W5P4 371 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 ZFP2Q6ZN57 461 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 H2AFVQ71UI9 128 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 PCP2Q8IVA1 136 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 NKAIN4Q8IVV8 208 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 RIMKLAQ8IXN7 391 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 ZNF786Q8N393 782 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 RNF175Q8N4F7 328 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 CBR4Q8N4T8 237 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 ZNF645Q8N7E2 425 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 CYB561D1Q8N8Q1 229 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 COX18Q8N8Q8 333 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 OR10G2Q8NGC3 310 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 OR5T3Q8NGG3 340 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 OR10G4Q8NGN3 311 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 SRSF12Q8WXF0 261 aaKnown RBP1.04□□□□□ -2.24
USP3-209ENST00000558925 RGP1Q92546 391 aaPredicted RBP1.04□□□□□ -2.24
USP3-209ENST00000558925 FAM104AQ969W3 186 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 LRRC39Q96DD0 335 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 GALNT14Q96FL9 552 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 PDXPQ96GD0 296 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 C9orf72Q96LT7 481 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 ZNF681Q96N22 645 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 OR2A5Q96R48 311 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 SAMD10Q9BYL1 202 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 SLC25A39Q9BZJ4 359 aaPredicted RBP1.04□□□□□ -2.24
USP3-209ENST00000558925 DEFB129Q9H1M3 183 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 TDRD3Q9H7E2 651 aaKnown RBP1.04□□□□□ -2.24
USP3-209ENST00000558925 PATZ1Q9HBE1 687 aaKnown RBP1.04□□□□□ -2.24
USP3-209ENST00000558925 SLC38A10Q9HBR0 1119 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 ISYNA1Q9NPH2 558 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 FBXO8Q9NRD0 319 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 MCUBQ9NWR8 336 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 TRMT112Q9UI30 125 aaKnown RBP1.04□□□□□ -2.24
USP3-209ENST00000558925 ADGRA3Q8IWK6 1321 aa1.04□□□□□ -2.24
USP3-209ENST00000558925 COL22A1Q8NFW1 1626 aaPredicted RBP1.04□□□□□ -2.24
USP3-209ENST00000558925 BRCA1P38398 1863 aaKnown RBP1.03□□□□□ -2.24
USP3-209ENST00000558925 IGKV1-27A0A075B6S5 117 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 A0A0J9YXV3 536 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 C5orf63A6NC05 138 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 ERICH4A6NGS2 130 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 H3BN98 237 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 NDUFS8O00217 210 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 XRCC2O43543 280 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 FOXH1O75593 365 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 GCM2O75603 506 aaPredicted RBP1.03□□□□□ -2.24
USP3-209ENST00000558925 SERPINB7O75635 380 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 SNAI1O95863 264 aaPredicted RBP1.03□□□□□ -2.24
USP3-209ENST00000558925 PTTG1O95997 202 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 HLA-DPB1P04440 258 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 DCNP07585 359 aaKnown RBP1.03□□□□□ -2.24
USP3-209ENST00000558925 RETP07949 1114 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 TACSTD2P09758 323 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 THRAP10827 490 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 TCN2P20062 427 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 SSTR5P35346 364 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 NUP62P37198 522 aaPredicted RBP1.03□□□□□ -2.24
USP3-209ENST00000558925 MYCNOSP40205 109 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 PPOXP50336 477 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 P2RX1P51575 399 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 UBE2E1P51965 193 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 ZNF121P58317 390 aaPredicted RBP1.03□□□□□ -2.24
USP3-209ENST00000558925 TAS2R46P59540 309 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 RPL23P62829 140 aaKnown RBP1.03□□□□□ -2.24
USP3-209ENST00000558925 MECOMQ03112 1051 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 IFT88Q13099 833 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 SLAQ13239 276 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 ART3Q13508 389 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 QPRTQ15274 297 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 STK11Q15831 433 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 C5orf64Q2M2E5 130 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 DEFB116Q30KQ4 102 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 NDUFAF6Q330K2 333 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 ORMDL2Q53FV1 153 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 TFDP3Q5H9I0 405 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 THEM4Q5T1C6 240 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 TSPO2Q5TGU0 170 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 FBXW9Q5XUX1 488 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 KDM4DQ6B0I6 523 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 OR2T5Q6IEZ7 315 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 SLC25A25Q6KCM7 469 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 Q6P435 159 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 CD300LGQ6UXG3 332 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 WDR82Q6UXN9 313 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 Q6ZVH6 145 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 UNC93AQ86WB7 457 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 RAB43Q86YS6 212 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 ASCC1Q8N9N2 400 aaKnown RBP1.03□□□□□ -2.24
USP3-209ENST00000558925 WDR31Q8NA23 367 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 NOXO1Q8NFA2 376 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 OR11H7Q8NGC8 314 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 OR6Q1Q8NGQ2 317 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 OR2T29Q8NH02 315 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 OR8U1Q8NH10 309 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 OR52P1PQ8NH57 321 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 OR5W2Q8NH69 310 aa1.03□□□□□ -2.24
USP3-209ENST00000558925 ITFG1Q8TB96 612 aa1.03□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms