RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 MPPED2Q15777 294 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 ETFDHQ16134 617 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 C10orf128Q5T292 105 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 FAM27D1Q5T7N8 215 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 TMEM244Q5VVB8 128 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 DCXRQ7Z4W1 244 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 ZNF227Q86WZ6 799 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 CCDC36Q8IYA8 594 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 SAMD12Q8N8I0 201 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 BVESQ8NE79 360 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 OR2M7Q8NG81 312 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 OR9K2Q8NGE7 335 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 OR52H1Q8NGJ2 320 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 OR13C5Q8NGS8 318 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 OR2V1Q8NHB1 315 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 TRMT10AQ8TBZ6 339 aaKnown RBP11.23□□□□□ -0.61
SHMT2-229ENST00000557348 ST7LQ8TDW4 575 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 ORAI1Q96D31 301 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 EMC6Q9BV81 110 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 ANKRD10Q9NXR5 420 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 CKLFQ9UBR5 152 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 MALT1Q9UDY8 824 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 POLR1DQ9Y2S0 133 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 LRP12Q9Y561 859 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 V9GY05 133 aa11.23□□□□□ -0.61
SHMT2-229ENST00000557348 TRBV5-7A0A0A0MS05 114 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 SMIM30A4D0T7 59 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 H0YC42 278 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 KLRC4-KLRK1H3BQV0 150 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 RP2O75695 350 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 NEURL1O76050 574 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 GPANK1O95872 356 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 ISG15P05161 165 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 HPNP05981 417 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 CALCBP10092 127 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 CEACAM1P13688 526 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 PSMB1P20618 241 aaKnown RBP11.22□□□□□ -0.61
SHMT2-229ENST00000557348 ACHEP22303 614 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 MMP16P51512 607 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 CARD18P57730 90 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 TSPAN5P62079 268 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 FOXK1P85037 733 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 FOXO1Q12778 655 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 KLF9Q13886 244 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-229ENST00000557348 OR1C1Q15619 314 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 ST3GAL2Q16842 350 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 WDR38Q5JTN6 314 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 PGAP1Q75T13 922 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 ASCL5Q7RTU5 278 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 CATSPERDQ86XM0 798 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 PDZD9Q8IXQ8 264 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 GALNT16Q8N428 558 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 OR6N1Q8NGY5 312 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 TSEN15Q8WW01 171 aaKnown RBP11.22□□□□□ -0.61
SHMT2-229ENST00000557348 C11orf40Q8WZ69 217 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 RGP1Q92546 391 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-229ENST00000557348 MCHR2Q969V1 340 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 AMELYQ99218 206 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 UQCC2Q9BRT2 126 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 IL17BQ9UHF5 180 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 SPATA2Q9UM82 520 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 ETV7Q9Y603 341 aa11.22□□□□□ -0.61
SHMT2-229ENST00000557348 MRPS18BQ9Y676 258 aaKnown RBP11.22□□□□□ -0.61
SHMT2-229ENST00000557348 TRAV6A0A075B6T7 132 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 A0A0J9YW62 118 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 IFITM5A6NNB3 132 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 ZNF878C9JN71 531 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 DVL2O14641 736 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 TNFSF11O14788 317 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 TRAPPC6AO75865 159 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 SCO1O75880 301 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 OPN1LWP04000 364 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 NMBP08949 121 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 QDPRP09417 244 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 CXCL3P19876 107 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 GIFP27352 417 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 CFPP27918 469 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 S100A11P31949 105 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 ZNF84P51523 738 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 CAPZA1P52907 286 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 TUSC1Q2TAM9 212 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 UBE2NLQ5JXB2 153 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 OLFML2AQ68BL7 652 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 OR7E24Q6IFN5 339 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 UQCC3Q6UW78 93 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 NLRC3Q7RTR2 1065 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-229ENST00000557348 NR2C2APQ86WQ0 139 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 PRSS35Q8N3Z0 413 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 ZNF671Q8TAW3 534 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 HSD17B8Q92506 261 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 TMEM54Q969K7 222 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 TMEM106AQ96A25 262 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 ZNF703Q9H7S9 590 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-229ENST00000557348 NDRG3Q9UGV2 375 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 HHLA2Q9UM44 414 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 FOXJ3Q9UPW0 622 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 DHDHQ9UQ10 334 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 LAMA1P25391 3075 aa11.21□□□□□ -0.61
SHMT2-229ENST00000557348 FAM186AA6NE01 2351 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms