RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 DTD1Q8TEA8 209 aa3.36□□□□□ -1.87
PRPF39-209ENST00000556353 PIH1D2Q8WWB5 315 aa3.36□□□□□ -1.87
PRPF39-209ENST00000556353 NAT6Q93015 286 aa3.36□□□□□ -1.87
PRPF39-209ENST00000556353 MRPL24Q96A35 216 aaKnown RBP3.36□□□□□ -1.87
PRPF39-209ENST00000556353 KIAA1143Q96AT1 154 aaPredicted RBP3.36□□□□□ -1.87
PRPF39-209ENST00000556353 FAF2Q96CS3 445 aa3.36□□□□□ -1.87
PRPF39-209ENST00000556353 COX14Q96I36 57 aa3.36□□□□□ -1.87
PRPF39-209ENST00000556353 ZNF641Q96N77 438 aaPredicted RBP3.36□□□□□ -1.87
PRPF39-209ENST00000556353 CSPG4P5Q96PW8 444 aa3.36□□□□□ -1.87
PRPF39-209ENST00000556353 TOLLIPQ9H0E2 274 aa3.36□□□□□ -1.87
PRPF39-209ENST00000556353 WWP1Q9H0M0 922 aa3.36□□□□□ -1.87
PRPF39-209ENST00000556353 DHX35Q9H5Z1 703 aaKnown RBP3.36□□□□□ -1.87
PRPF39-209ENST00000556353 AKIRIN1Q9H9L7 192 aaPredicted RBP3.36□□□□□ -1.87
PRPF39-209ENST00000556353 FOLH1BQ9HBA9 442 aa3.36□□□□□ -1.87
PRPF39-209ENST00000556353 CMTM6Q9NX76 183 aa3.36□□□□□ -1.87
PRPF39-209ENST00000556353 MLXQ9UH92 298 aa3.36□□□□□ -1.87
PRPF39-209ENST00000556353 CD84Q9UIB8 345 aa3.36□□□□□ -1.87
PRPF39-209ENST00000556353 ENPP5Q9UJA9 477 aa3.36□□□□□ -1.87
PRPF39-209ENST00000556353 GMPPBQ9Y5P6 360 aa3.36□□□□□ -1.87
PRPF39-209ENST00000556353 ZNF407Q9C0G0 2248 aa3.36□□□□□ -1.87
PRPF39-209ENST00000556353 SCN3AQ9NY46 2000 aa3.36□□□□□ -1.87
PRPF39-209ENST00000556353 NCOA6Q14686 2063 aaPredicted RBP3.35□□□□□ -1.87
PRPF39-209ENST00000556353 INTS1Q8N201 2190 aaKnown RBP3.35□□□□□ -1.87
PRPF39-209ENST00000556353 EML6Q6ZMW3 1958 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 IGHV1OR21-1A0A087WYE8 117 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 IGHV3-35A0A0C4DH35 117 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 A0A1W2PPV4 95 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 ZNF98A6NK75 572 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 K7EM74 188 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 CTDSPLO15194 276 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 EIF3HO15372 352 aaKnown RBP eCLIP3.35□□□□□ -1.87
PRPF39-209ENST00000556353 TOX3O15405 576 aaPredicted RBP3.35□□□□□ -1.87
PRPF39-209ENST00000556353 ZNF264O43296 627 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 HCN1O60741 890 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 SCN2BO60939 215 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 CPNE6O95741 557 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 IFNA6P05013 189 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 HOXC4P09017 264 aaPredicted RBP3.35□□□□□ -1.87
PRPF39-209ENST00000556353 CD3GP09693 182 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 CCNB1P14635 433 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 TNNI3P19429 210 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 FUT1P19526 365 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 F8A1P23610 371 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 MAGEA2P43356 314 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 CDC34P49427 236 aaPredicted RBP3.35□□□□□ -1.87
PRPF39-209ENST00000556353 STC1P52823 247 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 GFERP55789 205 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 AP1S1P61966 158 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 PPP1CAP62136 330 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 EIF3IQ13347 325 aaKnown RBP3.35□□□□□ -1.87
PRPF39-209ENST00000556353 DPYSL3Q14195 570 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 PON3Q15166 354 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 STX1AQ16623 288 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 PDK4Q16654 411 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 CHRFAM7AQ494W8 412 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 TMEM41BQ5BJD5 291 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.35□□□□□ -1.87
PRPF39-209ENST00000556353 C1orf146Q5VVC0 180 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 LIPNQ5VXI9 398 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 METTL21CQ5VZV1 264 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 PLCXD3Q63HM9 321 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 WDR25Q64LD2 544 aaPredicted RBP3.35□□□□□ -1.87
PRPF39-209ENST00000556353 NCBP2-AS2Q69YL0 99 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 CAPN13Q6MZZ7 669 aaPredicted RBP3.35□□□□□ -1.87
PRPF39-209ENST00000556353 DCUN1D2Q6PH85 259 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 CLEC18BQ6UXF7 455 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 GKN2Q86XP6 184 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 UBE2J2Q8N2K1 259 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 FADS6Q8N9I5 356 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 GATSQ8NAP1 163 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 UXS1Q8NBZ7 420 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 CCDC197Q8NCU1 140 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 OR2L5Q8NG80 312 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 OR4K14Q8NGD5 310 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 OR13F1Q8NGS4 319 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 SLC37A2Q8TED4 501 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 ZNF799Q96GE5 643 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 CTRCQ99895 268 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 BPIFA3Q9BQP9 254 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 IL22Q9GZX6 179 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 CAB39LQ9H9S4 337 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 IL1RL2Q9HB29 575 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 APMAPQ9HDC9 416 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 PNO1Q9NRX1 252 aaKnown RBP3.35□□□□□ -1.87
PRPF39-209ENST00000556353 UFSP2Q9NUQ7 469 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 PARVAQ9NVD7 372 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 GID8Q9NWU2 228 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 IMPAD1Q9NX62 359 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 SLCO1C1Q9NYB5 712 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 WARS2Q9UGM6 360 aaKnown RBP3.35□□□□□ -1.87
PRPF39-209ENST00000556353 ANK3Q12955 4377 aaKnown RBP3.35□□□□□ -1.87
PRPF39-209ENST00000556353 ANK2Q01484 3957 aa3.35□□□□□ -1.87
PRPF39-209ENST00000556353 FREM3P0C091 2139 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 ABCA4P78363 2273 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 A0A087X0T9 212 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 TRAV25A0A0B4J276 109 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 A0A1B0GUH1 482 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 GNG14A0A1W2PPG7 69 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 MGAT4DA6NG13 374 aa3.34□□□□□ -1.87
PRPF39-209ENST00000556353 TUBAL3A6NHL2 446 aa3.34□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms