RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 TLX2O43763 284 aaPredicted RBP9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 PRKYO43930 277 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 CRLF1O75462 422 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 GLCEO94923 617 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 TGFAP01135 160 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 HMGN1P05114 100 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 ADH4P08319 380 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 RAC2P15153 192 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 FASP25445 335 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 OTX1P32242 354 aaPredicted RBP9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 NAA10P41227 235 aaPredicted RBP9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 SLC6A9P48067 706 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 CHN2P52757 468 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 HCCSP53701 268 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 TPTEP56180 551 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 TMEM33P57088 247 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 LMO4P61968 165 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 ZNF92Q03936 586 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 GK2Q14410 553 aaPredicted RBP9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 PTGES3Q15185 160 aaKnown RBP9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 KLHL12Q53G59 568 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 TEX30Q5JUR7 227 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 C1orf174Q8IYL3 243 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 OR10AD1Q8NGE0 317 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 ITLN1Q8WWA0 313 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 ZNF799Q96GE5 643 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 INTS14Q96SY0 518 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 PKP2Q99959 881 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 COPS4Q9BT78 406 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 ABHD6Q9BV23 337 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 LPAR2Q9HBW0 351 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 TMEFF2Q9UIK5 374 aaPredicted RBP9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 ARHGAP32A7KAX9 2087 aa9.81□□□□□ -0.84
CCDC88C-208ENST00000554165 DYSFO75923 2080 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 CCDC182A6NF36 153 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 H3BNX3 289 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 MLNRO43193 412 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 HLA-DPB1P04440 258 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 CD55P08174 381 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 SELEP16581 610 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 PAICSP22234 425 aaKnown RBP9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 SLC2A5P22732 501 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 IGFBP5P24593 272 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 GZMKP49863 264 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 APOFQ13790 326 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 TAF13Q15543 124 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 SNAPC1Q16533 368 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 FAM209AQ5JX71 171 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 GLYATL3Q5SZD4 288 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 KDM4DQ6B0I6 523 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 CXXC5Q7LFL8 322 aaKnown RBP9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 HIPK1Q86Z02 1210 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 OR8G5Q8NG78 346 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 OR5L1Q8NGL2 311 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 PLEKHA8Q96JA3 519 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 MARCH7Q9H992 704 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 CYSLTR2Q9NS75 346 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 KRT84Q9NSB2 600 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 DNAJC27Q9NZQ0 273 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 ZDHHC8Q9ULC8 765 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 OAZ3Q9UMX2 235 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 WIPI2Q9Y4P8 454 aa9.8□□□□□ -0.84
CCDC88C-208ENST00000554165 WNK2Q9Y3S1 2297 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 IQCF6A8MYZ5 107 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 PRR32B1ATL7 298 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 F5H5P2 479 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 LMX1BO60663 402 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 MRPL3P09001 348 aaKnown RBP9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 TUBG1P23258 451 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 LIPAP38571 399 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 ACTR3P61158 418 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 RPS7P62081 194 aaKnown RBP9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 HOXA4Q00056 320 aaPredicted RBP9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 HFEQ30201 348 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 ZDHHC13Q8IUH4 622 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 PARP8Q8N3A8 854 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 ZNF283Q8N7M2 679 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 RNF133Q8WVZ7 376 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 DVL3Q92997 716 aaPredicted RBP9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 SPTSSAQ969W0 71 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 CENPNQ96H22 339 aaPredicted RBP9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 COG8Q96MW5 612 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 ZNF582Q96NG8 517 aaPredicted RBP9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 OR2V2Q96R30 315 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 KCNJ15Q99712 375 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 CIB1Q99828 191 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 SLC30A2Q9BRI3 323 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 EGLN1Q9GZT9 426 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 GABARAPL1Q9H0R8 117 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 BRD7Q9NPI1 651 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 TUBG2Q9NRH3 451 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 ZNF319Q9P2F9 582 aa9.79□□□□□ -0.84
CCDC88C-208ENST00000554165 MXRA5Q9NR99 2828 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 ZAR1LA6NP61 321 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 CLDN25C9JDP6 229 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 ZNF878C9JN71 531 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 J3QW42 95 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 EBAG9O00559 213 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 ZNF205O95201 554 aa9.78□□□□□ -0.84
CCDC88C-208ENST00000554165 PMELP40967 661 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms