RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CPED1A4D0V7 1026 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 EEF1E1-BLOC1S5C9J1V9 151 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 OR2T1O43869 369 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 SSX5O60225 188 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 PMP2P02689 132 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 ABOP16442 354 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 MGMTP16455 207 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 AKR1C4P17516 323 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 KLK2P20151 261 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 BDKRB2P30411 391 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 CDAP32320 146 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 PRKXP51817 358 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 AKR1C2P52895 323 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 QRFPP83859 136 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 AKR1C1Q04828 323 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF273Q14593 569 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 PCK2Q16822 640 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 TMEM244Q5VVB8 128 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 C11orf87Q6NUJ2 197 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 H1FNTQ75WM6 255 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-213ENST00000552720 COX15Q7KZN9 410 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 SYT13Q7L8C5 426 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 APCDD1LQ8NCL9 501 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 TMEM104Q8NE00 496 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 FBXW5Q969U6 566 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF471Q9BX82 626 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-213ENST00000552720 LMAN1LQ9HAT1 526 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 RASL12Q9NYN1 266 aa6.67□□□□□ -1.34
LIMA1-213ENST00000552720 CACNA1EQ15878 2313 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 A0A0A6YYD4 124 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 A0A1B0GX78 115 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 KANTRA0A1W2PQU2 76 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 C9orf170A2RU37 121 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 MEGF11A6BM72 1044 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 METTL12A8MUP2 240 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 DISC1C4P0D8 188 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 BET1O15155 118 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 SYT7O43581 403 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 STK17BO94768 372 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 ERCC1P07992 297 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-213ENST00000552720 NAGAP17050 411 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 BCKDHBP21953 392 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 DLSTP36957 453 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 IL13RA1P78552 427 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 CLVS2Q5SYC1 327 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 FAM69BQ5VUD6 431 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 OGFOD3Q6PK18 319 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 UNQ6126/PRO20091Q6UXV3 157 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF704Q6ZNC4 412 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-213ENST00000552720 TMPRSS9Q7Z410 1059 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 LYG2Q86SG7 212 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 SLC25A42Q86VD7 318 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 KCNRGQ8N5I3 272 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 OR1M1Q8NGA1 313 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 OR51E1Q8TCB6 317 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 STT3BQ8TCJ2 826 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 MARCH1Q8TCQ1 289 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 RNF133Q8WVZ7 376 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 ROBO4Q8WZ75 1007 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 MVB12AQ96EY5 273 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 PBOV1Q9GZY1 135 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 SEC61A2Q9H9S3 476 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 SLC2A4RGQ9NR83 387 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 FGF21Q9NSA1 209 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 COMMD9Q9P000 198 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF319Q9P2F9 582 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 B3GAT1Q9P2W7 334 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 CA14Q9ULX7 337 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 A0A1W2PNR3 127 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 C5orf63A6NC05 138 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF814B7Z6K7 855 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 TIAF1O95411 115 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 UBBP0CG47 229 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 UBCP0CG48 685 aaKnown RBP6.66□□□□□ -1.34
LIMA1-213ENST00000552720 PI3P19957 117 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 MMP16P51512 607 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 CLDN6P56747 220 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 RPS27AP62979 156 aaKnown RBP6.66□□□□□ -1.34
LIMA1-213ENST00000552720 UBA52P62987 128 aaKnown RBP6.66□□□□□ -1.34
LIMA1-213ENST00000552720 GFOD2Q3B7J2 385 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 CARD17Q5XLA6 110 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 AWAT2Q6E213 333 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 OR2W3Q7Z3T1 314 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 ANGPTL5Q86XS5 388 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 D2HGDHQ8N465 521 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 NKAIN3Q8N8D7 197 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 BHLHE23Q8NDY6 225 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 ZNF501Q96CX3 271 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-213ENST00000552720 CHRNA10Q9GZZ6 450 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 RAB33BQ9H082 229 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 SLCO5A1Q9H2Y9 848 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 BANF2Q9H503 90 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 LDAHQ9H6V9 325 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 CHST11Q9NPF2 352 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 SERINC1Q9NRX5 453 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 MBD2Q9UBB5 411 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 GPN3Q9UHW5 284 aaPredicted RBP6.66□□□□□ -1.34
LIMA1-213ENST00000552720 RAB22AQ9UL26 194 aa6.66□□□□□ -1.34
LIMA1-213ENST00000552720 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.65□□□□□ -1.34
LIMA1-213ENST00000552720 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms