RNA–Protein interactions for RNA: ENST00000552199.5

RAB3IP-216, Transcript of RAB3A interacting protein, human

TSL 1 (best)

Gene RAB3IP, Length 1,905 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB3IP-216	ENST00000552199		A0A0A6YYH2	397 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199		A6NJ64	397 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ZNF20	P17024	532 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	RAB6A	P20340	208 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	CCL1	P22362	96 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	GDF1	P27539	372 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	STAR	P49675	285 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ZNF84	P51523	738 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	SSBP1	Q04837	148 aa	Known RBP	12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	LINC00303	Q3SY05	128 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	HES3	Q5TGS1	186 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	FAAP20	Q6NZ36	180 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	FAM57B	Q71RH2	274 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	SLC22A24	Q8N4F4	322 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	OR11H7	Q8NGC8	314 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ADAMTS17	Q8TE56	1095 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	GPX8	Q8TED1	209 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ADGRG7	Q96K78	797 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	UQCC2	Q9BRT2	126 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ULBP2	Q9BZM5	246 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	OR10A4	Q9H209	315 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	METTL17	Q9H7H0	456 aa	Predicted RBP	12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	NOX3	Q9HBY0	568 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	GPR84	Q9NQS5	396 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	EMC3	Q9P0I2	261 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	FLVCR1	Q9Y5Y0	555 aa		12.36	□□□□□ -0.43
RAB3IP-216	ENST00000552199	SULT1C2	O00338	296 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	CXCL13	O43927	109 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	PRAF2	O60831	178 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ANOS1	P23352	680 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	FAU	P35544	74 aa	Known RBP	12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	GALK2	Q01415	458 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ABHD17B	Q5VST6	288 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	OR10K2	Q6IF99	312 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ZNF627	Q7L945	461 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	FGD2	Q7Z6J4	655 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	COMMD2	Q86X83	199 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	BEST4	Q8NFU0	473 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	OR13C9	Q8NGT0	318 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ZNF775	Q96BV0	537 aa	Predicted RBP	12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	FAM210A	Q96ND0	272 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	UTP23	Q9BRU9	249 aa	Known RBP	12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	SOX7	Q9BT81	388 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	FAM117A	Q9C073	453 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	BEX1	Q9HBH7	125 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	PLSCR3	Q9NRY6	295 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	MYEF2	Q9P2K5	600 aa	Known RBP	12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ITGB1BP2	Q9UKP3	347 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	RAB22A	Q9UL26	194 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	BOK	Q9UMX3	212 aa	Predicted RBP	12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	OR5H15	A6NDH6	313 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ZNF716	A6NP11	495 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	SMLR1	H3BR10	107 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ARPC1B	O15143	372 aa	Known RBP	12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	NEURL1	O76050	574 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	NDUFB6	O95139	128 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	HPX	P02790	462 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ERCC1	P07992	297 aa	Predicted RBP	12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ABO	P16442	354 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	POU3F2	P20265	443 aa	Predicted RBP	12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	RCVRN	P35243	200 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	VEGFC	P49767	419 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	GFRA1	P56159	465 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	CLDN15	P56746	228 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	MRPS34	P82930	218 aa	Known RBP	12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	TNK1	Q13470	666 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	CCDC92	Q53HC0	331 aa	Predicted RBP	12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	SLC25A25	Q6KCM7	469 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	DOK3	Q7L591	496 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	LRRC18	Q8N456	261 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	OR10D3	Q8NH80	312 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ZFAND1	Q8TCF1	268 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ROBO4	Q8WZ75	1007 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	DACT3	Q96B18	629 aa	Predicted RBP	12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	SEH1L	Q96EE3	360 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	GAL3ST1	Q99999	423 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	FAM173A	Q9BQD7	235 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	TMEM246	Q9BRR3	403 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199	SLC5A6	Q9Y289	635 aa		12.35	□□□□□ -0.43
RAB3IP-216	ENST00000552199		A0A1B0GUH1	482 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ICMT	O60725	284 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	TNFSF15	O95150	251 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	BPNT1	O95861	308 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	TGM6	O95932	706 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	NTF4	P34130	210 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	CASR	P41180	1078 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	PMPCA	Q10713	525 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	DCAF10	Q5QP82	559 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	FAM27B	Q5VT28	67 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ABLIM2	Q6H8Q1	611 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	PGAP1	Q75T13	922 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	OR2M7	Q8NG81	312 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	OR4C16	Q8NGL9	310 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	ZNF837	Q96EG3	531 aa	Predicted RBP	12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	MS4A3	Q96HJ5	214 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	PGAM5	Q96HS1	289 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	FAM71F1	Q96KD3	344 aa	Predicted RBP	12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	SIGLEC12	Q96PQ1	595 aa		12.34	□□□□□ -0.43
RAB3IP-216	ENST00000552199	SCPEP1	Q9HB40	452 aa		12.34	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms