RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	OR5M11	Q96RB7	305 aa		10.3	□□□□□ -0.76
DDB1-223	ENST00000543658	ZNF649	Q9BS31	505 aa		10.3	□□□□□ -0.76
DDB1-223	ENST00000543658	BCL2L14	Q9BZR8	327 aa		10.3	□□□□□ -0.76
DDB1-223	ENST00000543658	OR52A1	Q9UKL2	312 aa		10.3	□□□□□ -0.76
DDB1-223	ENST00000543658	CLEC18A	A5D8T8	446 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	VSTM5	A8MXK1	200 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	ATP6V1G2-DDX39B	F2Z307	99 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	GOSR1	O95249	250 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	FAM157B	P0CG42	384 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	UBC	P0CG48	685 aa	Known RBP	10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	COX6B1	P14854	86 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	PCSK6	P29122	969 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	MFGE8	Q08431	387 aa	Predicted RBP	10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	MLLT11	Q13015	90 aa	Predicted RBP	10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	SNTB2	Q13425	540 aa	Known RBP	10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	CDK5R1	Q15078	307 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	NCMAP	Q5T1S8	102 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	UBE2U	Q5VVX9	321 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	CLEC18B	Q6UXF7	455 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	ZNF704	Q6ZNC4	412 aa	Predicted RBP	10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	C22orf34	Q6ZV56	151 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	ZNF676	Q8N7Q3	588 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	CLEC18C	Q8NCF0	446 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	OR1J1	Q8NGS3	322 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	OR2G2	Q8NGZ5	317 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	OR5AK2	Q8NH90	309 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	AKAP1	Q92667	903 aa	Known RBP eCLIP	10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	MGLL	Q99685	303 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	C1QTNF5	Q9BXJ0	243 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	PBOV1	Q9GZY1	135 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	OPA3	Q9H6K4	179 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	ISYNA1	Q9NPH2	558 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	TBCCD1	Q9NVR7	557 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	FAM206A	Q9NX38	181 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	NUFIP1	Q9UHK0	495 aa	Known RBP	10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	ZNF391	Q9UJN7	358 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	LSM2	Q9Y333	95 aa	Known RBP	10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	RNF115	Q9Y4L5	304 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	ATP23	Q9Y6H3	246 aa		10.29	□□□□□ -0.76
DDB1-223	ENST00000543658	RTTN	Q86VV8	2226 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658		A0A1B0GVI7	797 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	DPRX	A6NFQ7	191 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	TMEM212	A6NML5	194 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	SMPD2	O60906	423 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	SMIM18	P0DKX4	95 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	ZNF35	P13682	527 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	IGFBP2	P18065	325 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	PCMT1	P22061	227 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	CFL1	P23528	166 aa	Known RBP	10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	CALCR	P30988	508 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	CCR9	P51686	369 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	GTF2A1	P52655	376 aa	Predicted RBP	10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	UCP2	P55851	309 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	PPP1CB	P62140	327 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	SLC3A1	Q07837	685 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	ACSM1	Q08AH1	577 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	ODF4	Q2M2E3	257 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	KRTAP27-1	Q3LI81	207 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	ARMCX4	Q5H9R4	360 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	WDR38	Q5JTN6	314 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	RGS7BP	Q6MZT1	257 aa	Predicted RBP	10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	ADAM5	Q6NVV9	412 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	FDX2	Q6P4F2	183 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	MRPL21	Q7Z2W9	205 aa	Known RBP	10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	CATSPERD	Q86XM0	798 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	PAQR4	Q8N4S7	273 aa	Predicted RBP	10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	ZFP41	Q8N8Y5	198 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	OR8B12	Q8NGG6	310 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	SMIM19	Q96E16	107 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	RGCC	Q9H4X1	137 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	PTTG3P	Q9NZH4	202 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	KCNN3	Q9UGI6	736 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658	MYO18B	Q8IUG5	2567 aa		10.28	□□□□□ -0.76
DDB1-223	ENST00000543658		E9PI62	339 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	SRSF10	O75494	262 aa	Known RBP	10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	MTRF1	O75570	445 aa	Known RBP	10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	PNP	P00491	289 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	ZNF12	P17014	697 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	CEL	P19835	753 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	TUBG1	P23258	451 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	GCH1	P30793	250 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	WNT5A	P41221	380 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	SELENOV	P59797	346 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	HGFAC	Q04756	655 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	SPOCK1	Q08629	439 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	TST	Q16762	297 aa	Known RBP	10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	SNAI3	Q3KNW1	292 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	ZNF718	Q3SXZ3	478 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	TMEM244	Q5VVB8	128 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	VHLL	Q6RSH7	139 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	RFPL4B	Q6ZWI9	263 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	NAA40	Q86UY6	237 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	ELMOD2	Q8IZ81	293 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	ZNF101	Q8IZC7	436 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	TSEN15	Q8WW01	171 aa	Known RBP	10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	REEP6	Q96HR9	211 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	SPOCK3	Q9BQ16	436 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	PLEKHA1	Q9HB21	404 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	G6PC2	Q9NQR9	355 aa		10.27	□□□□□ -0.77
DDB1-223	ENST00000543658	TUBG2	Q9NRH3	451 aa		10.27	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms