RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 HPP00738 406 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 IGLV3-1P01715 115 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 CHRM2P08172 466 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 RAB3AP20336 220 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 DNASE1P24855 282 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 SRD5A2P31213 254 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 VEGFCP49767 419 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 PER3P56645 1201 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 ZNF273Q14593 569 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 GLYATL3Q5SZD4 288 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 DOK3Q7L591 496 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 RPS19BP1Q86WX3 136 aaKnown RBP8.75□□□□□ -1.01
SS18-205ENST00000542420 KDM8Q8N371 416 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 MEIOBQ8N635 442 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 OR10S1Q8NGN2 331 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 AQP3Q92482 292 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 FAM46BQ96A09 425 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 MGAT4AQ9UM21 535 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 ZNF98A6NK75 572 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 SMLR1H3BR10 107 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 ITGB2P05107 769 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 TMIGD3P0DMS9 266 aaPredicted RBP8.75□□□□□ -1.01
SS18-205ENST00000542420 ZNF28P17035 718 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 EFNB2P52799 333 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 CLDN6P56747 220 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 TRIM61Q5EBN2 209 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 TMEM255AQ5JRV8 349 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 STEAP1BQ6NZ63 245 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 TEX261Q6UWH6 196 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 ZNF600Q6ZNG1 722 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 MDGA2Q7Z553 956 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 LINC00346Q8IVM7 164 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 PLPP7Q8NBV4 271 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 SEH1LQ96EE3 360 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 SMAD5Q99717 465 aaKnown RBP8.75□□□□□ -1.01
SS18-205ENST00000542420 DDA1Q9BW61 102 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 OR10A4Q9H209 315 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 HPF1Q9NWY4 346 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 SLC39A1Q9NY26 324 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 MRPS18BQ9Y676 258 aaKnown RBP8.75□□□□□ -1.01
SS18-205ENST00000542420 U3KQ87 197 aa8.75□□□□□ -1.01
SS18-205ENST00000542420 A0A0U1RQV5 110 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 A0A1B0GTI1 187 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 A0A1W2PPL8 197 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 OR2M5A3KFT3 312 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 DHRS7CA6NNS2 312 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 P2RY10O00398 339 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 HPXP02790 462 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 GTF2F2P13984 249 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 CXCL3P19876 107 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 MSR1P21757 451 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 GUCA1AP43080 201 aaPredicted RBP8.74□□□□□ -1.01
SS18-205ENST00000542420 ALDH3B1P43353 468 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 CSNK1A1P48729 337 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 FOXL2P58012 376 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 ZP1P60852 638 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 QRFPP83859 136 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 PMPCAQ10713 525 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 TMEM176BQ3YBM2 270 aaPredicted RBP8.74□□□□□ -1.01
SS18-205ENST00000542420 DCAF12Q5T6F0 453 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 GABRG1Q8N1C3 465 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 ZNF680Q8NEM1 530 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 FOXN4Q96NZ1 517 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 MESP1Q9BRJ9 268 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 EDEM2Q9BV94 578 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 STRADBQ9C0K7 418 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 NELFAQ9H3P2 528 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 PROK2Q9HC23 129 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 PNRC2Q9NPJ4 139 aaKnown RBP8.74□□□□□ -1.01
SS18-205ENST00000542420 CENPMQ9NSP4 180 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 ANAPC10Q9UM13 185 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 PCDHGA5Q9Y5G8 931 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 HMSDA8MTL9 139 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 HAAOP46952 286 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 SSPNQ14714 243 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 ARL6IP1Q15041 203 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 ODF4Q2M2E3 257 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 LPCAT3Q6P1A2 487 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.74□□□□□ -1.01
SS18-205ENST00000542420 WDFY1Q8IWB7 410 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 GJC3Q8NFK1 279 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 GINS4Q9BRT9 223 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.74□□□□□ -1.01
SS18-205ENST00000542420 DKKL1Q9UK85 242 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 PLEKHA6Q9Y2H5 1048 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 POLR1DQ9Y2S0 133 aa8.74□□□□□ -1.01
SS18-205ENST00000542420 CACNA1CQ13936 2221 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 OR6C65A6NJZ3 312 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 TMEM14DPA8MWL7 114 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 DISC1C4P0D8 188 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 ZIC3O60481 467 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 GSTP1P09211 210 aaKnown RBP8.73□□□□□ -1.01
SS18-205ENST00000542420 QDPRP09417 244 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 ZNF20P17024 532 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 OTX1P32242 354 aaPredicted RBP8.73□□□□□ -1.01
SS18-205ENST00000542420 THBS4P35443 961 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 SRSF4Q08170 494 aaKnown RBP8.73□□□□□ -1.01
SS18-205ENST00000542420 TAF13Q15543 124 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 PNLIPRP3Q17RR3 467 aa8.73□□□□□ -1.01
SS18-205ENST00000542420 ZNF260Q3ZCT1 412 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms