RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 CMTM3Q96MX0 182 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 RANGRFQ9HD47 186 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-216ENST00000541410 ELF5Q9UKW6 265 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-216ENST00000541410 SVILO95425 2214 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 LOC100289279A0A1B0GTE1 492 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 WT1P19544 449 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-216ENST00000541410 FSTP19883 344 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 CCDC92Q53HC0 331 aaPredicted RBP12.78□□□□□ -0.36
CLIP1-216ENST00000541410 BAIAP2L2Q6UXY1 529 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 THRSPQ92748 146 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 ST6GAL2Q96JF0 529 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 SF3B5Q9BWJ5 86 aaKnown RBP12.78□□□□□ -0.36
CLIP1-216ENST00000541410 CACNG6Q9BXT2 260 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 CNTD2Q9H8S5 307 aa12.78□□□□□ -0.36
CLIP1-216ENST00000541410 GABARAPH6UMI1 98 aa12.77□□□□□ -0.36
CLIP1-216ENST00000541410 GSTZ1O43708 216 aaPredicted RBP12.77□□□□□ -0.36
CLIP1-216ENST00000541410 KRT33AO76009 404 aa12.77□□□□□ -0.36
CLIP1-216ENST00000541410 GLSO94925 669 aaPredicted RBP12.77□□□□□ -0.36
CLIP1-216ENST00000541410 SP1P08047 785 aa12.77□□□□□ -0.36
CLIP1-216ENST00000541410 LHX2P50458 406 aa12.77□□□□□ -0.36
CLIP1-216ENST00000541410 ZNF84P51523 738 aa12.77□□□□□ -0.36
CLIP1-216ENST00000541410 LSM6P62312 80 aaKnown RBP12.77□□□□□ -0.36
CLIP1-216ENST00000541410 RSPO1Q2MKA7 263 aaPredicted RBP12.77□□□□□ -0.36
CLIP1-216ENST00000541410 SFRP5Q5T4F7 317 aa12.77□□□□□ -0.36
CLIP1-216ENST00000541410 ZNF627Q7L945 461 aa12.77□□□□□ -0.36
CLIP1-216ENST00000541410 GJC3Q8NFK1 279 aa12.77□□□□□ -0.36
CLIP1-216ENST00000541410 PNPLA2Q96AD5 504 aa12.77□□□□□ -0.36
CLIP1-216ENST00000541410 DEFB127Q9H1M4 99 aa12.77□□□□□ -0.36
CLIP1-216ENST00000541410 MCUBQ9NWR8 336 aa12.77□□□□□ -0.36
CLIP1-216ENST00000541410 B4GALT7Q9UBV7 327 aa12.77□□□□□ -0.36
CLIP1-216ENST00000541410 ZNF221Q9UK13 617 aa12.77□□□□□ -0.36
CLIP1-216ENST00000541410 LIPGQ9Y5X9 500 aa12.77□□□□□ -0.36
CLIP1-216ENST00000541410 DCHS1Q96JQ0 3298 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 GGT3PA6NGU5 568 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 CENPXA8MT69 81 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 CTDSPLO15194 276 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 TCRBP04435 133 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 NR2C1P13056 603 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 CEACAM16Q2WEN9 425 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 ZNF813Q6ZN06 617 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 GPR137CQ8N3F9 429 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 BEST4Q8NFU0 473 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 OR1M1Q8NGA1 313 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 FNDC9Q8TBE3 224 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 NPRL2Q8WTW4 380 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 PHF21AQ96BD5 680 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 PGAM5Q96HS1 289 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 MRI1Q9BV20 369 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 FLVCR2Q9UPI3 526 aa12.77□□□□□ -0.37
CLIP1-216ENST00000541410 HMX3A6NHT5 357 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 CDRT15L2A8MXV6 281 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 XRCC3O43542 346 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 ZNF20P17024 532 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 BDKRB2P30411 391 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 CCL11P51671 97 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 CLDN18P56856 261 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 PPIAP62937 165 aaKnown RBP12.76□□□□□ -0.37
CLIP1-216ENST00000541410 ARG2P78540 354 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 PMP22Q01453 160 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 MOGAT2Q3SYC2 334 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 ABLIM2Q6H8Q1 611 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 ZNF774Q6NX45 483 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 ANKRD16Q6P6B7 361 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 AKR7LQ8NHP1 331 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 FGFBP3Q8TAT2 258 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 CPNE4Q96A23 557 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-216ENST00000541410 B3GNT4Q9C0J1 378 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 DPAGT1Q9H3H5 408 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 HRASLSQ9HDD0 168 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 ASCL3Q9NQ33 180 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 RBMX2Q9Y388 322 aaKnown RBP12.76□□□□□ -0.37
CLIP1-216ENST00000541410 PRR33A8MZF0 331 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 HPNP05981 417 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 KCNJ8Q15842 424 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 SLC25A25Q6KCM7 469 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 ACBD4Q8NC06 268 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 ITPKCQ96DU7 683 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 LYZL4Q96KX0 146 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 TP63Q9H3D4 680 aaPredicted RBP12.76□□□□□ -0.37
CLIP1-216ENST00000541410 CALHM2Q9HA72 323 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 NPAP1Q9NZP6 1156 aa12.76□□□□□ -0.37
CLIP1-216ENST00000541410 MRPS18CQ9Y3D5 142 aaKnown RBP12.76□□□□□ -0.37
CLIP1-216ENST00000541410 MGAQ8IWI9 3026 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 AKAP13Q12802 2813 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 A0A0A6YYJ9 748 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 CIB4A0PJX0 185 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 DNPH1O43598 174 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 GRB2P62993 217 aaKnown RBP12.75□□□□□ -0.37
CLIP1-216ENST00000541410 CBX3Q13185 183 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 RNFT1Q5M7Z0 435 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 ELFN2Q5R3F8 820 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 TUSC5Q8IXB3 177 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 MDS2Q8NDY4 140 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 OR5D14Q8NGL3 314 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 OR6M1Q8NGM8 313 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 CREB3L1Q96BA8 519 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 CMBLQ96DG6 245 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 CYYR1Q96J86 154 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 IP6K3Q96PC2 410 aa12.75□□□□□ -0.37
CLIP1-216ENST00000541410 DIABLOQ9NR28 239 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms