RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 OR6K6Q8NGW6 343 aa12□□□□□ -0.49
USP28-209ENST00000540925 SIGLEC11Q96RL6 698 aa12□□□□□ -0.49
USP28-209ENST00000540925 SLC30A2Q9BRI3 323 aa12□□□□□ -0.49
USP28-209ENST00000540925 ZNF556Q9HAH1 456 aa12□□□□□ -0.49
USP28-209ENST00000540925 DCAF16Q9NXF7 216 aa12□□□□□ -0.49
USP28-209ENST00000540925 LPAR3Q9UBY5 353 aa12□□□□□ -0.49
USP28-209ENST00000540925 B4DSR2 109 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 HMGN1P05114 100 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 SPARCP09486 303 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 POU1F1P28069 291 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 GSTT1P30711 240 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 DVL1P1P54792 670 aaPredicted RBP11.99□□□□□ -0.49
USP28-209ENST00000540925 SNAI3Q3KNW1 292 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 AVPI1Q5T686 147 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 DRAM2Q6UX65 266 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 RHOUQ7L0Q8 258 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 PRSS45Q7RTY3 260 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 ATG16L2Q8NAA4 619 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 OR5K1Q8NHB7 308 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 RNF133Q8WVZ7 376 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 CCL17Q92583 94 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 SPTSSAQ969W0 71 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 SLAMF6Q96DU3 332 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 AMELYQ99218 206 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 REPIN1Q9BWE0 567 aaKnown RBP11.99□□□□□ -0.49
USP28-209ENST00000540925 GABARAPL1Q9H0R8 117 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 NARFLQ9H6Q4 476 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 TREM2Q9NZC2 230 aa11.99□□□□□ -0.49
USP28-209ENST00000540925 ZNF878C9JN71 531 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 PRODHO43272 600 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 TPD52L2O43399 206 aaKnown RBP11.98□□□□□ -0.49
USP28-209ENST00000540925 IGHV2-70P01814 119 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 IGHV2-5P01817 119 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 LCATP04180 440 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 TNFRSF1AP19438 455 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 TNFSF4P23510 183 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 CRISP1P54107 249 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 PRSS12P56730 875 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 EFNB1P98172 346 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 MVKQ03426 396 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 CR1LQ2VPA4 569 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 C1orf146Q5VVC0 180 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 TMEM236Q5W0B7 351 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 KDM4DQ6B0I6 523 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 PLBD1Q6P4A8 553 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 DPY19L4Q7Z388 723 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 OR5AS1Q8N127 324 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 BBS1Q8NFJ9 593 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 OR13G1Q8NGZ3 307 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 ITLN1Q8WWA0 313 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 SPSB4Q96A44 273 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 ZNF582Q96NG8 517 aaPredicted RBP11.98□□□□□ -0.49
USP28-209ENST00000540925 OR2V2Q96R30 315 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 INTS14Q96SY0 518 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 KCNJ15Q99712 375 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 ABHD6Q9BV23 337 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 ZNF665Q9H7R5 613 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 GCM1Q9NP62 436 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 PAPOLBQ9NRJ5 636 aaKnown RBP11.98□□□□□ -0.49
USP28-209ENST00000540925 AP4S1Q9Y587 144 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 DYSFO75923 2080 aa11.98□□□□□ -0.49
USP28-209ENST00000540925 PRR23D1E9PI22 279 aaPredicted RBP11.97□□□□□ -0.49
USP28-209ENST00000540925 H0YL77 283 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 MSMBP08118 114 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 PRR23D2P0DMB1 279 aaPredicted RBP11.97□□□□□ -0.49
USP28-209ENST00000540925 SELEP16581 610 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 PAICSP22234 425 aaKnown RBP11.97□□□□□ -0.49
USP28-209ENST00000540925 THBS2P35442 1172 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 RBMXP38159 391 aaKnown RBP11.97□□□□□ -0.49
USP28-209ENST00000540925 OPRL1P41146 370 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 ESRRGP62508 458 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 ZNF92Q03936 586 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 SLC3A1Q07837 685 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 SLC35D3Q5M8T2 416 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 ERI1Q8IV48 349 aaKnown RBP11.97□□□□□ -0.49
USP28-209ENST00000540925 CPOQ8IVL8 374 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 OR10AD1Q8NGE0 317 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 OTOSQ8NHW6 89 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 RAB1CQ92928 201 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 ZMYND19Q96E35 227 aaPredicted RBP11.97□□□□□ -0.49
USP28-209ENST00000540925 TIMD4Q96H15 378 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 MEGF10Q96KG7 1140 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 COPS4Q9BT78 406 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 BEX2Q9BXY8 128 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 SHARPINQ9H0F6 387 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 TMEM106BQ9NUM4 274 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 NPTNQ9Y639 398 aa11.97□□□□□ -0.49
USP28-209ENST00000540925 MITFO75030 526 aaPredicted RBP11.96□□□□□ -0.49
USP28-209ENST00000540925 PTBP3O95758 552 aaKnown RBP11.96□□□□□ -0.49
USP28-209ENST00000540925 FASP25445 335 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 EPHA2P29317 976 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 GATA4P43694 442 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 MMP16P51512 607 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 GRB2P62993 217 aaKnown RBP11.96□□□□□ -0.49
USP28-209ENST00000540925 MALLQ13021 153 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 EIF2B1Q14232 305 aaKnown RBP11.96□□□□□ -0.49
USP28-209ENST00000540925 PTGES3Q15185 160 aaKnown RBP11.96□□□□□ -0.49
USP28-209ENST00000540925 ZNF181Q2M3W8 571 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 GLYATL3Q5SZD4 288 aa11.96□□□□□ -0.49
USP28-209ENST00000540925 PGAP1Q75T13 922 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms