RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 DPY19L2P2Q6ZN68 376 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 SLC15A3Q8IY34 581 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 OR11L1Q8NGX0 322 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 HSH2DQ96JZ2 352 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 TBX15Q96SF7 602 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 RERGLQ9H628 205 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 GMPR2Q9P2T1 348 aaKnown RBP11.27□□□□□ -0.61
SS18-204ENST00000539244 IER3IP1Q9Y5U9 82 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 ENPP4Q9Y6X5 453 aa11.27□□□□□ -0.61
SS18-204ENST00000539244 IGLV1-36A0A0B4J1U3 117 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 CENPVL3A0A0U1RRI6 287 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 ZNF879B4DU55 563 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 SLC22A2O15244 555 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 FAM20BO75063 409 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 PPP1R3DO95685 299 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 ZNF682O95780 498 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 SFTPBP07988 381 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 RPS6KA3P51812 740 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 PDCD1Q15116 288 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 KCNJ8Q15842 424 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 MEP1BQ16820 701 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 RUSC1-AS1Q66K80 236 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 BRICD5Q6PL45 260 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 ZNF620Q6ZNG0 422 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 FKBP9P1Q75LS8 142 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 CYP4Z1Q86W10 505 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 SLC26A10Q8NG04 563 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 SSMEM1Q8WWF3 244 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 DYRK2Q92630 601 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 RSRC1Q96IZ7 334 aaKnown RBP11.26□□□□□ -0.61
SS18-204ENST00000539244 TSSK2Q96PF2 358 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 PCGF1Q9BSM1 259 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 SLC22A4Q9H015 551 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 WDR76Q9H967 626 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 ARMCX1Q9P291 453 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 KIF17Q9P2E2 1029 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 CTSZQ9UBR2 303 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 RPS6KA6Q9UK32 745 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 TMCC3Q9ULS5 477 aa11.26□□□□□ -0.61
SS18-204ENST00000539244 CLPXO76031 633 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 TOX4O94842 621 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 SERPINA1P01009 418 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 H1F0P07305 194 aaKnown RBP11.25□□□□□ -0.61
SS18-204ENST00000539244 TROVE2P10155 538 aaKnown RBP eCLIP11.25□□□□□ -0.61
SS18-204ENST00000539244 MDH1P40925 334 aaKnown RBP11.25□□□□□ -0.61
SS18-204ENST00000539244 KRTAP10-3P60369 221 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 LIPEQ05469 1076 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 ECH1Q13011 328 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 MPPED2Q15777 294 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 C11orf91Q3C1V1 193 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 ASPHD2Q6ICH7 369 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 SLC18B1Q6NT16 456 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 CORO6Q6QEF8 472 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 CFAP77Q6ZQR2 320 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 OR6V1Q8N148 313 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 PLPP7Q8NBV4 271 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 TBC1D15Q8TC07 691 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 GATAD2BQ8WXI9 593 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 RCN3Q96D15 328 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 WDFY2Q96P53 400 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 CCT8L2Q96SF2 557 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 ATF6BQ99941 703 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 SIRPDQ9H106 197 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 PNRC2Q9NPJ4 139 aaKnown RBP11.25□□□□□ -0.61
SS18-204ENST00000539244 TNFRSF19Q9NS68 423 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 ACOXLQ9NUZ1 547 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 ERVK-18Q9QC07 812 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 RNF7Q9UBF6 113 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 B9D1Q9UPM9 204 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 NOP16Q9Y3C1 178 aaKnown RBP11.25□□□□□ -0.61
SS18-204ENST00000539244 CAPN7Q9Y6W3 813 aa11.25□□□□□ -0.61
SS18-204ENST00000539244 LGALS8O00214 317 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 NME4O00746 187 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 NDUFA2O43678 99 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 PRSS12P56730 875 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 TRAP1Q12931 704 aaKnown RBP11.24□□□□□ -0.61
SS18-204ENST00000539244 MALLQ13021 153 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 PRAMEF6Q5VXH4 476 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 CGB2Q6NT52 195 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 C8orf82Q6P1X6 216 aaPredicted RBP11.24□□□□□ -0.61
SS18-204ENST00000539244 SMARCD3Q6STE5 483 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 PGAP1Q75T13 922 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 ZBTB46Q86UZ6 589 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 LDLRAD3Q86YD5 345 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 PNLDC1Q8NA58 520 aaKnown RBP11.24□□□□□ -0.61
SS18-204ENST00000539244 C19orf18Q8NEA5 215 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 LINC01006Q8NI28 216 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 DHRS1Q96LJ7 313 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 TECTBQ96PL2 329 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 PITX2Q99697 317 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 RBM4BQ9BQ04 359 aaKnown RBP11.24□□□□□ -0.61
SS18-204ENST00000539244 TRIM15Q9C019 465 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 VIPAS39Q9H9C1 493 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 FN3KRPQ9HA64 309 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 TRIM36Q9NQ86 728 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 UFSP2Q9NUQ7 469 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 NDUFAF4Q9P032 175 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 CYB5R1Q9UHQ9 305 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 RNF114Q9Y508 228 aa11.24□□□□□ -0.61
SS18-204ENST00000539244 IGHV1-69DA0A0B4J2H0 117 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms