RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 NFASCO94856 1347 aa3.9□□□□□ -1.79
CD44-220ENST00000525688 UNC80Q8N2C7 3258 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 IGKV6D-21A0A0A0MT36 114 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 IQCMA0A1B0GVH7 501 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 GNG14A0A1W2PPG7 69 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 PP2D1A8MPX8 630 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 ZNF487B1APH4 448 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 ANHXE9PGG2 379 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 K7EN84 100 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 PLPP3O14495 311 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 TM9SF1O15321 606 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 MAGEC1O60732 1142 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 ANXA9O76027 345 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 UTS2O95399 124 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 TDP2O95551 362 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 CCNE2O96020 404 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 ORM1P02763 201 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 RHOCP08134 193 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 ZNF286BP0CG31 522 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 CFC1BP0CG36 223 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 CFC1P0CG37 223 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 ABOP16442 354 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 MGMTP16455 207 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 CCNE1P24864 410 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 TGFBR2P37173 567 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 DDOSTP39656 456 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 DAP3P51398 398 aaKnown RBP3.89□□□□□ -1.79
CD44-220ENST00000525688 OR2B8PP59922 312 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 DHODHQ02127 395 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 STX4Q12846 297 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 RIGQ13278 110 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 UBE2V2Q15819 145 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 CYBRD1Q53TN4 286 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 SYPL2Q5VXT5 272 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 ZNF836Q6ZNA1 936 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 FRRS1Q6ZNA5 592 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 APTXQ7Z2E3 356 aaKnown RBP3.89□□□□□ -1.79
CD44-220ENST00000525688 PLA2G4DQ86XP0 818 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 CMTM1Q8IZ96 169 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 LINC01561Q8N1V8 128 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 KIF2BQ8N4N8 673 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 CATSPER1Q8NEC5 780 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 OR4F17Q8NGA8 305 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 OR4K2Q8NGD2 314 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 OR4F5Q8NH21 305 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 RPLP0P6Q8NHW5 317 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 TBCKQ8TEA7 893 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 PTH2Q96A98 100 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 ZBED6CLQ96FA7 236 aaPredicted RBP3.89□□□□□ -1.79
CD44-220ENST00000525688 WFIKKN1Q96NZ8 548 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 SERPINB12Q96P63 405 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 OR4F4Q96R69 305 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 TRIM51Q9BSJ1 452 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 ING2Q9H160 280 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 METTL9Q9H1A3 318 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 ARMC7Q9H6L4 198 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 NHEJ1Q9H9Q4 299 aaPredicted RBP3.89□□□□□ -1.79
CD44-220ENST00000525688 BEX1Q9HBH7 125 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 C3orf14Q9HBI5 128 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 RETNQ9HD89 108 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 NRN1Q9NPD7 142 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 ASCL3Q9NQ33 180 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 EXD2Q9NVH0 621 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 PAK1IP1Q9NWT1 392 aaPredicted RBP3.89□□□□□ -1.79
CD44-220ENST00000525688 KLK11Q9UBX7 282 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 OPN4Q9UHM6 478 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 ERVW-1Q9UQF0 538 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 RCL1Q9Y2P8 373 aaKnown RBP3.89□□□□□ -1.79
CD44-220ENST00000525688 MYH7BA7E2Y1 1941 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 XIRP2A4UGR9 3374 aa3.89□□□□□ -1.79
CD44-220ENST00000525688 A0A087WYN8 130 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 TRBV7-9A0A0J9YWB2 115 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 PRR23AA6NEV1 266 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 VSTM2BA6NLU5 285 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 MPTX1A8MV57 137 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 HIDE1A8MVS5 230 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 G3V3Y1 287 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 H0Y980 276 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 ACOX3O15254 700 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 SLC31A1O15431 190 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 MAGEB4O15481 346 aaPredicted RBP3.88□□□□□ -1.79
CD44-220ENST00000525688 TNFSF12O43508 249 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 ATP8B1O43520 1251 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 SLC37A4O43826 429 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 UGT2B17O75795 530 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 TCRBP04435 133 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 TACSTD2P09758 323 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 SMIM10L2AP0DMW4 78 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 SMIM10L2BP0DMW5 78 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 BCKDHAP12694 445 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 FOXN2P32314 431 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 ARR3P36575 388 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 RANBP1P43487 201 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 IDH2P48735 452 aaKnown RBP3.88□□□□□ -1.79
CD44-220ENST00000525688 CLDN6P56747 220 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 SP4Q02446 784 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 RIPPLY1Q0D2K3 151 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 GPNMBQ14956 572 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 SHHQ15465 462 aa3.88□□□□□ -1.79
CD44-220ENST00000525688 RFTN2Q52LD8 501 aaPredicted RBP3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms