RNA–Protein interactions for RNA: ENST00000512151.5

NUP54-211, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,385 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-211ENST00000512151 MMP16P51512 607 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 UGT2B15P54855 530 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 COPZ1P61923 177 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 COX10Q12887 443 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 SEC23BQ15437 767 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 TBC1D28Q2M2D7 210 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 ZNF718Q3SXZ3 478 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 ALG10BQ5I7T1 473 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 FAM201AQ5SY85 155 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 LYPD2Q6UXB3 125 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 ZNF841Q6ZN19 808 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 Q6ZR03 302 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 RFPL4BQ6ZWI9 263 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 PDZD9Q8IXQ8 264 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 OFCC1Q8IZS5 231 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 WFDC9Q8NEX5 89 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 OR4C15Q8NGM1 316 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 OR6N1Q8NGY5 312 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 OR52J3Q8NH60 311 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 MUC7Q8TAX7 377 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 TMEM255BQ8WV15 326 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 ITLN1Q8WWA0 313 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 NEIL1Q96FI4 390 aaPredicted RBP7.51□□□□□ -1.21
NUP54-211ENST00000512151 SAMD8Q96LT4 415 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 TMEM246Q9BRR3 403 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 ZNF426Q9BUY5 554 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 FNDC11Q9BVV2 318 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 POLR2J2Q9GZM3 115 aaKnown RBP7.51□□□□□ -1.21
NUP54-211ENST00000512151 POLR2J3Q9H1A7 115 aaKnown RBP7.51□□□□□ -1.21
NUP54-211ENST00000512151 PPA2Q9H2U2 334 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 DPAGT1Q9H3H5 408 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 NMNAT1Q9HAN9 279 aaPredicted RBP7.51□□□□□ -1.21
NUP54-211ENST00000512151 C12orf10Q9HB07 376 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 B3GAT2Q9NPZ5 323 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 MEPEQ9NQ76 525 aaPredicted RBP7.51□□□□□ -1.21
NUP54-211ENST00000512151 RPS6KB2Q9UBS0 482 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 ZDHHC8Q9ULC8 765 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 STARD9Q9P2P6 4700 aa7.51□□□□□ -1.21
NUP54-211ENST00000512151 A0A087WUU8 490 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 TRBV4-1A0A0J9YWV2 114 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 ZNF879B4DU55 563 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 LRRN3E7EW58 273 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 RNASEK-C17orf49H0YIS7 233 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 DENRO43583 198 aaKnown RBP7.5□□□□□ -1.21
NUP54-211ENST00000512151 AKAP8O43823 692 aaKnown RBP7.5□□□□□ -1.21
NUP54-211ENST00000512151 TOX4O94842 621 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 GADD45GO95257 159 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 CYB5R3P00387 301 aaPredicted RBP7.5□□□□□ -1.21
NUP54-211ENST00000512151 CST1P01037 141 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 H1F0P07305 194 aaKnown RBP7.5□□□□□ -1.21
NUP54-211ENST00000512151 HMGA2P52926 109 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 AQP4P55087 323 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 SPIBQ01892 262 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 ST3GAL3Q11203 375 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 NKAPLQ5M9Q1 402 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 WDR25Q64LD2 544 aaPredicted RBP7.5□□□□□ -1.21
NUP54-211ENST00000512151 OR2T5Q6IEZ7 315 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 LRFN4Q6PJG9 635 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 H1FNTQ75WM6 255 aaPredicted RBP7.5□□□□□ -1.21
NUP54-211ENST00000512151 AMIGO2Q86SJ2 522 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 UEVLDQ8IX04 471 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 OR2T29Q8NH02 315 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 DNAJA4Q8WW22 397 aaPredicted RBP7.5□□□□□ -1.21
NUP54-211ENST00000512151 LHX4Q969G2 390 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 ZNF347Q96SE7 839 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 VCXQ9H320 206 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 CNTD2Q9H8S5 307 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 RNF121Q9H920 327 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 CYSLTR2Q9NS75 346 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 TMEM38BQ9NVV0 291 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 ZNRD1Q9P1U0 126 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 MIOXQ9UGB7 285 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 PPP1R3CQ9UQK1 317 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 LYVE1Q9Y5Y7 322 aa7.5□□□□□ -1.21
NUP54-211ENST00000512151 LOC100509620A0A075B734 347 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 A0A1W2PRQ8 180 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 MEGF11A6BM72 1044 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 VGLL3A8MV65 326 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 ENSAO43768 121 aaKnown RBP7.49□□□□□ -1.21
NUP54-211ENST00000512151 F13BP05160 661 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 LYNP07948 512 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 MMP7P09237 267 aaPredicted RBP7.49□□□□□ -1.21
NUP54-211ENST00000512151 VSIG10L2P0DP72 767 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 FUT1P19526 365 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 CD33P20138 364 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 CCNOP22674 350 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 GTF2E2P29084 291 aaKnown RBP7.49□□□□□ -1.21
NUP54-211ENST00000512151 HOXD3P31249 432 aaPredicted RBP7.49□□□□□ -1.21
NUP54-211ENST00000512151 HSPA13P48723 471 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 CSNK1A1P48729 337 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 MED21Q13503 144 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 DGCR6Q14129 220 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 TRAM2Q15035 370 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 LRRC36Q1X8D7 754 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 TMEM53Q6P2H8 277 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 TTC33Q6PID6 262 aaPredicted RBP7.49□□□□□ -1.21
NUP54-211ENST00000512151 CYP4Z1Q86W10 505 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 HS3ST5Q8IZT8 346 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 SCCPDHQ8NBX0 429 aa7.49□□□□□ -1.21
NUP54-211ENST00000512151 OR2Z1Q8NG97 314 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms