RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ADAMTS20P59510 1910 aa14.34□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 CCDC163A0A0D9SF12 145 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 A0A1B0GTI1 187 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 TMEM269A0A1B0GVZ9 245 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 A0A1B0GX78 115 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 TMEM235A6NFC5 223 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ZNF736B4DX44 427 aaPredicted RBP14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 AFF3P51826 1226 aaKnown RBP14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 NXPH1P58417 271 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 RNF4P78317 190 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 OR7A5Q15622 319 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 BPIFB2Q8N4F0 458 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ZNF248Q8NDW4 579 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 OR5M9Q8NGP3 310 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 OR1S1Q8NH92 325 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 AQP3Q92482 292 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SLC22A11Q9NSA0 550 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ANKUB1A6NFN9 424 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SNAPINO95295 136 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CYB5AP00167 134 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 FGF2P09038 288 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 FBXW4P57775 412 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SRSF4Q08170 494 aaKnown RBP14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ZNF260Q3ZCT1 412 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 TRIM61Q5EBN2 209 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 TMEM244Q5VVB8 128 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 DEGS2Q6QHC5 323 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 C17orf107Q6ZR85 190 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 H1FNTQ75WM6 255 aaPredicted RBP14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 COX15Q7KZN9 410 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 OVCH2Q7RTZ1 564 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CARFQ8N187 725 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 PAQR4Q8N4S7 273 aaPredicted RBP14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ACBD4Q8NC06 268 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 STEAP2Q8NFT2 490 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 OR4S1Q8NGB4 309 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 MFSD8Q8NHS3 518 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 MED29Q9NX70 200 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SEMA5BQ9P283 1151 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 FBXL2Q9UKC9 423 aa14.33□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 OR14I1A6ND48 311 aa14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 NPIPA5E9PKD4 350 aa14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 RAB27BO00194 218 aa14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 LGALS8O00214 317 aa14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 NUDT21O43809 227 aaKnown RBP14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CD8AP01732 235 aa14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 RAB6AP20340 208 aa14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 NUP62P37198 522 aaPredicted RBP14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 DHRS2Q13268 280 aa14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ZNF813Q6ZN06 617 aa14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 RNF133Q8WVZ7 376 aa14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 TMEM234Q8WY98 164 aa14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 MRGPRFQ96AM1 343 aa14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CEP250Q9BV73 2442 aa14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CNTD2Q9H8S5 307 aa14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 FAM206AQ9NX38 181 aa14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 NPIPA1Q9UND3 350 aa14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 FARSAQ9Y285 508 aaKnown RBP14.32□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 TEX46H3BTG2 121 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 PIAS2O75928 621 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 RLN2P04090 185 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 DAP3P51398 398 aaKnown RBP14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 DNM1P34Q6PK57 102 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 PLXDC1Q8IUK5 500 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 MISPQ8IVT2 679 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 NKAIN3Q8N8D7 197 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 OR5M8Q8NGP6 311 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ST8SIA1Q92185 356 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 FGGYQ96C11 551 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ZNF501Q96CX3 271 aaPredicted RBP14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SUSD2Q9UGT4 822 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 PFDN2Q9UHV9 154 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 VSIG4Q9Y279 399 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 TTRP02766 147 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 UBCP0CG48 685 aaKnown RBP14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 MMP16P51512 607 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 QRFPP83859 136 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 HSF1Q00613 529 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 POU3F1Q03052 451 aaPredicted RBP14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 UNC119Q13432 240 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 PHF19Q5T6S3 580 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 PAPD4Q6PIY7 484 aaKnown RBP14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 FJX1Q86VR8 437 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 APCDD1LQ8NCL9 501 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 BVESQ8NE79 360 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 FOXRED1Q96CU9 486 aaPredicted RBP14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CMBLQ96DG6 245 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CENPMQ9NSP4 180 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 RAB22AQ9UL26 194 aa14.31□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 CPED1A4D0V7 1026 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 NPIPB13A6NJU9 1138 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 NPIPB4C9JG80 1138 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 EIF1AYO14602 144 aaKnown RBP14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SPDEFO95238 335 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 HPP00738 406 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 H2BFMP0C1H6 154 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SSTP61278 116 aa14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 ZNF169Q14929 603 aaPredicted RBP14.3□□□□□ -0.12
MSH5-SAPCD1-208ENST00000498473 SCGB2B2Q4G0G5 96 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms