RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 MGARPQ8TDB4 240 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 TWIST2Q8WVJ9 160 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 CKAP2Q8WWK9 683 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 RAB1CQ92928 201 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 SLC38A4Q969I6 547 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 CIDECQ96AQ7 238 aaPredicted RBP3.26□□□□□ -1.89
USP54-217ENST00000498213 PHF21AQ96BD5 680 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 ROPN1LQ96C74 230 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 FBXO17Q96EF6 278 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 CHMP6Q96FZ7 201 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 SLC41A3Q96GZ6 507 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 EGLN2Q96KS0 407 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 SLC35G5Q96KT7 338 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 CCDC115Q96NT0 180 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 OXGR1Q96P68 337 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 KRTAP4-4Q9BYR3 166 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 SLC19A3Q9BZV2 496 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 ROPN1BQ9BZX4 212 aaPredicted RBP3.26□□□□□ -1.89
USP54-217ENST00000498213 DPY30Q9C005 99 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 CENPHQ9H3R5 247 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 ROPN1Q9HAT0 212 aaPredicted RBP3.26□□□□□ -1.89
USP54-217ENST00000498213 BCL2L10Q9HD36 194 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 CTPS2Q9NRF8 586 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 TNFRSF19Q9NS68 423 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 SNTG1Q9NSN8 517 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 MRGBPQ9NV56 204 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 P2RX2Q9UBL9 471 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 HAO1Q9UJM8 370 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 OSGIN1Q9UJX0 560 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 TMED7Q9Y3B3 224 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 ARFGEF3Q5TH69 2177 aa3.26□□□□□ -1.89
USP54-217ENST00000498213 IGHV2OR16-5A0A0B4J2B6 119 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 WI2-2373I1.2A0A1W2PRP0 233 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 A8MXK9 166 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 HMGB1P1B2RPK0 211 aaPredicted RBP3.25□□□□□ -1.89
USP54-217ENST00000498213 CLDN25C9JDP6 229 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 FTCDNL1E5RQL4 147 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 BIRC5O15392 142 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 RGS16O15492 202 aaPredicted RBP3.25□□□□□ -1.89
USP54-217ENST00000498213 TRAF3IP2O43734 574 aaPredicted RBP3.25□□□□□ -1.89
USP54-217ENST00000498213 FCMRO60667 390 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 MFN2O95140 757 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 RAB36O95755 333 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 C6orf47O95873 294 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 SERPINA5P05154 406 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 CD55P08174 381 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 OR8G3PP0DMU2 310 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 LAMP1P11279 417 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 ZNF35P13682 527 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 ETFAP13804 333 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 ZNF250P15622 560 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 PPIBP23284 216 aaKnown RBP3.25□□□□□ -1.89
USP54-217ENST00000498213 IDH2P48735 452 aaKnown RBP3.25□□□□□ -1.89
USP54-217ENST00000498213 ATP4BP51164 291 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 P2RY4P51582 365 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 FOXA1P55317 472 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 RAG2P55895 527 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 ARL16Q0P5N6 197 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 ZP4Q12836 540 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 CAMK2DQ13557 499 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 SLC9A3R2Q15599 337 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 GPR68Q15743 365 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 TOMM34Q15785 309 aaPredicted RBP3.25□□□□□ -1.89
USP54-217ENST00000498213 CTF1Q16619 201 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 ANKDD1AQ495B1 522 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 SLC36A2Q495M3 483 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 TMEM155Q4W5P6 130 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 CCNJQ5T5M9 372 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 C1orf140Q5VVS0 124 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 IL23RQ5VWK5 629 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 ATG16L1Q676U5 607 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 ULK3Q6PHR2 472 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 ARL9Q6T311 187 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 FRRS1Q6ZNA5 592 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 RRM2BQ7LG56 351 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 SPATA21Q7Z572 469 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 SPATA19Q7Z5L4 167 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 PTOV1Q86YD1 416 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 C4orf33Q8N1A6 199 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 ZIC4Q8N9L1 334 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 OR52E4Q8NGH9 312 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 OR4F5Q8NH21 305 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 CDC26Q8NHZ8 85 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 ZNF519Q8TB69 540 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 LRRC8CQ8TDW0 803 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 C11orf40Q8WZ69 217 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 ELMOD3Q96FG2 381 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 THOC1Q96FV9 657 aaKnown RBP3.25□□□□□ -1.89
USP54-217ENST00000498213 C16orf58Q96GQ5 468 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 KCNA7Q96RP8 456 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 B9D2Q9BPU9 175 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 TMEM43Q9BTV4 400 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 POLR2J2Q9GZM3 115 aaKnown RBP3.25□□□□□ -1.89
USP54-217ENST00000498213 EGLN1Q9GZT9 426 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 POLR2J3Q9H1A7 115 aaKnown RBP3.25□□□□□ -1.89
USP54-217ENST00000498213 TUBB1Q9H4B7 451 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 RMND5AQ9H871 391 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 NOX3Q9HBY0 568 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 SDF2L1Q9HCN8 221 aa3.25□□□□□ -1.89
USP54-217ENST00000498213 B3GNT2Q9NY97 397 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms