RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 GABRR1P24046 479 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 B3GNTL1Q67FW5 361 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 NUDT9Q9BW91 350 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 TINAGL1Q9GZM7 467 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 NELFAQ9H3P2 528 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 CACNA1GO43497 2377 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 UBE2NP61088 152 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 PMPCAQ10713 525 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 PRICKLE4Q2TBC4 344 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 DPPA2Q7Z7J5 298 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 DND1Q8IYX4 353 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 ARIH2OSQ8N7S6 290 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 SFT2D1Q8WV19 159 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 NKX3-1Q99801 234 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 ENKD1Q9H0I2 346 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 CA10Q9NS85 328 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 DOCK6Q96HP0 2047 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 CDC42EP2O14613 210 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 CXCL2P19875 107 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 TAGLN2P37802 199 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 HOXA1P49639 335 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 AGFG1P52594 562 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 LANCL3Q6ZV70 420 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 CCNL2Q96S94 520 aaPredicted RBP14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 MCTS1Q9ULC4 181 aaKnown RBP14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 FOXJ3Q9UPW0 622 aa14.73□□□□□ -0.05
CCDC88B-209ENST00000494080 KCNJ3P48549 501 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 HIST2H3AQ71DI3 136 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 GPR119Q8TDV5 335 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 FGGYQ96C11 551 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 OR10A2Q9H208 303 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 SIGLEC7Q9Y286 467 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 FAM74A7A6NL05 159 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 UMAD1C9J7I0 102 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 ZNF354AO60765 605 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 OR2C1O95371 312 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 IFNA1P01562 189 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 CPN1P15169 458 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 FAM74A3Q4VXF1 159 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 AAED1Q7RTV5 226 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 LAT2Q9GZY6 243 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 OR5V1Q9UGF6 321 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 TMEM218A2RU14 115 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 OR2J2O76002 312 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 SEMG1P04279 462 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 DUSP2Q05923 314 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 ARL6IP1Q15041 203 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 MRM1Q6IN84 353 aaKnown RBP14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 SLC43A2Q8N370 569 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 TERB2Q8NHR7 220 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 NUDCD2Q8WVJ2 157 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 AKR1E2Q96JD6 320 aa14.72□□□□□ -0.05
CCDC88B-209ENST00000494080 GLSO94925 669 aaPredicted RBP14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 ICAM2P13598 275 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 FOLR1P15328 257 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 NAGAP17050 411 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 SLC35A1P78382 337 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 MRPL21Q7Z2W9 205 aaKnown RBP14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 MTFP1Q9UDX5 166 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 ZFPL1O95159 310 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 C16orf47Q6ZP98 133 aaPredicted RBP14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 MORN4Q8NDC4 146 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 OR4D6Q8NGJ1 314 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 GLYATL2Q8WU03 294 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 HSD17B8Q92506 261 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 KCNJ15Q99712 375 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 DBHP09172 617 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 THSD4Q6ZMP0 1018 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 FJX1Q86VR8 437 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 FRZBQ92765 325 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 TMEM59Q9BXS4 323 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 TAS2R4Q9NYW5 299 aa14.71□□□□□ -0.05
CCDC88B-209ENST00000494080 MRPL33O75394 65 aaKnown RBP14.71□□□□□ -0.06
CCDC88B-209ENST00000494080 THBS2P35442 1172 aa14.71□□□□□ -0.06
CCDC88B-209ENST00000494080 ATP1B3P54709 279 aa14.71□□□□□ -0.06
CCDC88B-209ENST00000494080 ACTBL2Q562R1 376 aa14.71□□□□□ -0.06
CCDC88B-209ENST00000494080 SLC16A14Q7RTX9 510 aa14.71□□□□□ -0.06
CCDC88B-209ENST00000494080 OR52A1Q9UKL2 312 aa14.71□□□□□ -0.06
CCDC88B-209ENST00000494080 DIRAS3O95661 229 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 HOXC4P09017 264 aaPredicted RBP14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 SLC36A2Q495M3 483 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 FBXW12Q6X9E4 464 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 CPEB2Q7Z5Q1 589 aaKnown RBP14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 BOKQ9UMX3 212 aaPredicted RBP14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 A0A0B4J2E0 115 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 A0A1B0GX12 115 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 ANKRD20A5PA0PJZ0 165 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 RNASEK-C17orf49H0YIS7 233 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 HOXD4P09016 255 aaPredicted RBP14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 HTR5AP47898 357 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 HSF1Q00613 529 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 KLF9Q13886 244 aaPredicted RBP14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 CLINT1Q14677 625 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 C21orf62-AS1Q17RA5 79 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 MRPL41Q8IXM3 137 aaKnown RBP14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 OR9K2Q8NGE7 335 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 OR1L3Q8NH93 324 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 PIGCQ92535 297 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 KTI12Q96EK9 354 aaPredicted RBP14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms