RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 PNPLA2Q96AD5 504 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 GPR87Q9BY21 358 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 METTL17Q9H7H0 456 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 GPR84Q9NQS5 396 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 ZNF222Q9UK12 451 aa18.62■□□□□ 0.57
CCDC88B-208ENST00000492980 MEIS3P1A6NDR6 274 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 NDUFB6O95139 128 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 F10P00742 488 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 SULT1A3P0DMM9 295 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 SULT1A4P0DMN0 295 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 RAB3AP20336 220 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 CCL1P22362 96 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 CTSSP25774 331 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 FAUP35544 74 aaKnown RBP18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 CAPZA1P52907 286 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 ZNF627Q7L945 461 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 OR13C9Q8NGT0 318 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 INTS12Q96CB8 462 aaKnown RBP18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 SFXN2Q96NB2 322 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 UTP23Q9BRU9 249 aaKnown RBP18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 STMN3Q9NZ72 180 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 A0A0A6YYH2 397 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 A0A1B0GUH1 482 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 A6NJ64 397 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 C21orf140B9A014 251 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 FABP7O15540 132 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 TGM6O95932 706 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 ZNF20P17024 532 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 RAB6AP20340 208 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 SSBP1Q04837 148 aaKnown RBP18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 WIPI1Q5MNZ9 446 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 FAM57BQ71RH2 274 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 COMMD2Q86X83 199 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 SLC22A24Q8N4F4 322 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 ADGRG7Q96K78 797 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 UQCC2Q9BRT2 126 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 RBM24Q9BX46 236 aaKnown RBP18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 ULBP2Q9BZM5 246 aa18.61■□□□□ 0.57
CCDC88B-208ENST00000492980 NCOA6Q14686 2063 aaPredicted RBP18.6■□□□□ 0.57
CCDC88B-208ENST00000492980 ICMTO60725 284 aa18.6■□□□□ 0.57
CCDC88B-208ENST00000492980 ANXA3P12429 323 aa18.6■□□□□ 0.57
CCDC88B-208ENST00000492980 ABOP16442 354 aa18.6■□□□□ 0.57
CCDC88B-208ENST00000492980 CARD18P57730 90 aa18.6■□□□□ 0.57
CCDC88B-208ENST00000492980 HIST1H3AP68431 136 aa18.6■□□□□ 0.57
CCDC88B-208ENST00000492980 GALK2Q01415 458 aa18.6■□□□□ 0.57
CCDC88B-208ENST00000492980 PMPCAQ10713 525 aa18.6■□□□□ 0.57
CCDC88B-208ENST00000492980 EIF3IQ13347 325 aaKnown RBP18.6■□□□□ 0.57
CCDC88B-208ENST00000492980 MOGAT2Q3SYC2 334 aa18.6■□□□□ 0.57
CCDC88B-208ENST00000492980 HIST2H3PS2Q5TEC6 136 aa18.6■□□□□ 0.57
CCDC88B-208ENST00000492980 HIST2H3AQ71DI3 136 aa18.6■□□□□ 0.57
CCDC88B-208ENST00000492980 PIAS4Q8N2W9 510 aaPredicted RBP18.6■□□□□ 0.57
CCDC88B-208ENST00000492980 GJC3Q8NFK1 279 aa18.6■□□□□ 0.57
CCDC88B-208ENST00000492980 SEH1LQ96EE3 360 aa18.6■□□□□ 0.57
CCDC88B-208ENST00000492980 MRPS18CQ9Y3D5 142 aaKnown RBP18.6■□□□□ 0.57
CCDC88B-208ENST00000492980 SULT1C2O00338 296 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 SSNA1O43805 119 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 TRAPPC6AO75865 159 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 GTF2F2P13984 249 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 CNR1P21554 472 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 RAD52P43351 418 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 FOXO1Q12778 655 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 SLC25A25Q6KCM7 469 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 DHRS13Q6UX07 377 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 CLEC1AQ8NC01 280 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 OR4D10Q8NGI6 311 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 EDEM2Q9BV94 578 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 ZFP64Q9NPA5 681 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 LRFN1Q9P244 771 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 FLVCR1Q9Y5Y0 555 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 LPLP06858 475 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 GDF1P27539 372 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 STARP49675 285 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 MECP2P51608 486 aaKnown RBP18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 QRFPP83859 136 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 METTL11BQ5VVY1 283 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 SPINK14Q6IE38 97 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 JMJD6Q6NYC1 403 aaPredicted RBP18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 LRRC18Q8N456 261 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 ITFG2Q969R8 447 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 ZNF775Q96BV0 537 aaPredicted RBP18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 FAM71F1Q96KD3 344 aaPredicted RBP18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 HYLS1Q96M11 299 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 CDC6Q99741 560 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 SLA2Q9H6Q3 261 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 RAB22AQ9UL26 194 aa18.59■□□□□ 0.57
CCDC88B-208ENST00000492980 MEIKINA0A087WXM9 373 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 OR5H15A6NDH6 313 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 ZNF716A6NP11 495 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 E9PLN8 166 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 CXCL13O43927 109 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 BPNT1O95861 308 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 ZNF806P0C7X5 589 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 AKAIN1P0CW23 69 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 CD96P40200 585 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 UNC119Q13432 240 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 CCDC92Q53HC0 331 aaPredicted RBP18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 LAMTOR1Q6IAA8 161 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 TMEM53Q6P2H8 277 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 Q6ZTK2 550 aa18.58■□□□□ 0.57
CCDC88B-208ENST00000492980 DOK3Q7L591 496 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms