RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 PLEKHA6Q9Y2H5 1048 aa15.95■□□□□ 0.14
VIM-206ENST00000487938 CEP192Q8TEP8 1941 aa15.95■□□□□ 0.14
VIM-206ENST00000487938 BCAT2O15382 392 aaPredicted RBP15.94■□□□□ 0.14
VIM-206ENST00000487938 ABOP16442 354 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 LAP3P28838 519 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 HRH1P35367 487 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 CD96P40200 585 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 ZNF41P51814 821 aaPredicted RBP15.94■□□□□ 0.14
VIM-206ENST00000487938 QRFPP83859 136 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 PPP1R1AQ13522 171 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 MEF2DQ14814 521 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 FAM74A1Q5RGS3 127 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 RAB12Q6IQ22 244 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 KMT5CQ86Y97 462 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 SLC22A24Q8N4F4 322 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 OR5D14Q8NGL3 314 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 POC1BQ8TC44 478 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 PCED1AQ9H1Q7 454 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 WDR13Q9H1Z4 485 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 B3GALT5Q9Y2C3 310 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 RPH3AQ9Y2J0 694 aaPredicted RBP15.94■□□□□ 0.14
VIM-206ENST00000487938 MRPS17Q9Y2R5 130 aaKnown RBP15.94■□□□□ 0.14
VIM-206ENST00000487938 A0A1B0GTI1 187 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 A8MXK9 166 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 TSPAN4O14817 238 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 CD8AP01732 235 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 ANOS1P23352 680 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 AVPR2P30518 371 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 CLRN1P58418 232 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 AWAT2Q6E213 333 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 PTCRAQ6ISU1 281 aaPredicted RBP15.94■□□□□ 0.14
VIM-206ENST00000487938 TMEM81Q6P7N7 255 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 COMMD2Q86X83 199 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 OR10G3Q8NGC4 313 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 EDAQ92838 391 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 CYYR1Q96J86 154 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 PRRT1Q99946 306 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 NICN1Q9BSH3 213 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 GPR160Q9UJ42 338 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 POLR1DQ9Y2S0 133 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 LHFPL6Q9Y693 200 aa15.94■□□□□ 0.14
VIM-206ENST00000487938 PMP2P02689 132 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 RAB3AP20336 220 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 PRKACBP22694 351 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 ZBTB25P24278 435 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 DMRTC1Q5HYR2 192 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 SLC25A42Q86VD7 318 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 ZNF101Q8IZC7 436 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 ADAD2Q8NCV1 583 aaKnown RBP15.93■□□□□ 0.14
VIM-206ENST00000487938 NUBPLQ8TB37 319 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 CASTOR1Q8WTX7 329 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 ASB13Q8WXK3 278 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 ST8SIA2Q92186 375 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 MRPL13Q9BYD1 178 aaKnown RBP15.93■□□□□ 0.14
VIM-206ENST00000487938 IFT46Q9NQC8 304 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 ZNF107Q9UII5 783 aaPredicted RBP15.93■□□□□ 0.14
VIM-206ENST00000487938 SRPK3Q9UPE1 567 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 KCNK7Q9Y2U2 307 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 RALGAPA1Q6GYQ0 2036 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 WDFY3Q8IZQ1 3526 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 MED12Q93074 2177 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 EXPH5Q8NEV8 1989 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 ASCC3Q8N3C0 2202 aaKnown RBP15.93■□□□□ 0.14
VIM-206ENST00000487938 NPIPB13A6NJU9 1138 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 CCDC85CA6NKD9 419 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 NPIPB4C9JG80 1138 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 AKR1C4P17516 323 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 ZNF93P35789 620 aaPredicted RBP15.93■□□□□ 0.14
VIM-206ENST00000487938 AFF3P51826 1226 aaKnown RBP15.93■□□□□ 0.14
VIM-206ENST00000487938 CAPZA1P52907 286 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 ATP1B3P54709 279 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 EMP2P54851 167 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 SUMO3P55854 103 aaPredicted RBP15.93■□□□□ 0.14
VIM-206ENST00000487938 IL13RA1P78552 427 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 PLPPR5Q32ZL2 321 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 PHF19Q5T6S3 580 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 LYG2Q86SG7 212 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 UEVLDQ8IX04 471 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 BVESQ8NE79 360 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 OR2I1PQ8NGU4 316 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 PPP1R1CQ8WVI7 109 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 WDR77Q9BQA1 342 aaPredicted RBP15.93■□□□□ 0.14
VIM-206ENST00000487938 SDHAF3Q9NRP4 125 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 COMMD9Q9P000 198 aa15.93■□□□□ 0.14
VIM-206ENST00000487938 GPN3Q9UHW5 284 aaPredicted RBP15.93■□□□□ 0.14
VIM-206ENST00000487938 OR2AT4A6NND4 320 aa15.92■□□□□ 0.14
VIM-206ENST00000487938 ZNF814B7Z6K7 855 aa15.92■□□□□ 0.14
VIM-206ENST00000487938 OR2J2O76002 312 aa15.92■□□□□ 0.14
VIM-206ENST00000487938 STK17BO94768 372 aa15.92■□□□□ 0.14
VIM-206ENST00000487938 BPNT1O95861 308 aa15.92■□□□□ 0.14
VIM-206ENST00000487938 HPP00738 406 aa15.92■□□□□ 0.14
VIM-206ENST00000487938 DCNP07585 359 aaKnown RBP15.92■□□□□ 0.14
VIM-206ENST00000487938 FGF2P09038 288 aa15.92■□□□□ 0.14
VIM-206ENST00000487938 MGMTP16455 207 aa15.92■□□□□ 0.14
VIM-206ENST00000487938 AGTR1P30556 359 aa15.92■□□□□ 0.14
VIM-206ENST00000487938 BAMBIQ13145 260 aa15.92■□□□□ 0.14
VIM-206ENST00000487938 THEM4Q5T1C6 240 aa15.92■□□□□ 0.14
VIM-206ENST00000487938 C11orf87Q6NUJ2 197 aa15.92■□□□□ 0.14
VIM-206ENST00000487938 KCTD9Q7L273 389 aa15.92■□□□□ 0.14
VIM-206ENST00000487938 OR5B2Q96R09 309 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms