RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 LYNP07948 512 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 RAC2P15153 192 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 KITLGP21583 273 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 ANOS1P23352 680 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 COL8A2P25067 703 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 SLC15A1P46059 708 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 CX3CR1P49238 355 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 HCCSP53701 268 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 RAD23AP54725 363 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 GRB2P62993 217 aaKnown RBP12.57□□□□□ -0.4
USP4-212ENST00000486549 MALLQ13021 153 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 SNAI3Q3KNW1 292 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 ZMAT1Q5H9K5 638 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 DRAM2Q6UX65 266 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 FBXW12Q6X9E4 464 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 COLCA1Q6ZS62 124 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 ZNF786Q8N393 782 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 OTOSQ8NHW6 89 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 RNF133Q8WVZ7 376 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 EME1Q96AY2 570 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 HAVCR1Q96D42 359 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 TEAD3Q99594 435 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 BPESC1Q9GZL8 116 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 DNAJC27Q9NZQ0 273 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 CGGBP1Q9UFW8 167 aaPredicted RBP12.57□□□□□ -0.4
USP4-212ENST00000486549 KLHDC2Q9Y2U9 406 aa12.57□□□□□ -0.4
USP4-212ENST00000486549 TLN2Q9Y4G6 2542 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 C5orf63A6NC05 138 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 VWC2LB2RUY7 222 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 TBX1O43435 398 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 ANXA2P07355 339 aaKnown RBP12.56□□□□□ -0.4
USP4-212ENST00000486549 H2BFMP0C1H6 154 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 OTX1P32242 354 aaPredicted RBP12.56□□□□□ -0.4
USP4-212ENST00000486549 LIPAP38571 399 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 NR4A2P43354 598 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 CDC42P60953 191 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 GK2Q14410 553 aaPredicted RBP12.56□□□□□ -0.4
USP4-212ENST00000486549 NXNL2Q5VZ03 156 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 ZBTB49Q6ZSB9 765 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 MEPCEQ7L2J0 689 aaKnown RBP12.56□□□□□ -0.4
USP4-212ENST00000486549 SLC16A9Q7RTY1 509 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 MRPL21Q7Z2W9 205 aaKnown RBP12.56□□□□□ -0.4
USP4-212ENST00000486549 ZNF454Q8N9F8 522 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 BHLHE23Q8NDY6 225 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 OR2AE1Q8NHA4 323 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 FAM81AQ8TBF8 368 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 RDH5Q92781 318 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 YIPF5Q969M3 257 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 CNN2Q99439 309 aaKnown RBP12.56□□□□□ -0.4
USP4-212ENST00000486549 TTTY10Q9BZA0 68 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 SAP30LQ9HAJ7 183 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 BRD7Q9NPI1 651 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 LAMP5Q9UJQ1 280 aa12.56□□□□□ -0.4
USP4-212ENST00000486549 A0A096LNT2 108 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 ERICH4A6NGS2 130 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 SLC22A31A6NKX4 558 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 ACHEP22303 614 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 USF1P22415 310 aaPredicted RBP12.55□□□□□ -0.4
USP4-212ENST00000486549 OPRL1P41146 370 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 EFNB1P98172 346 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 FAM209AQ5JX71 171 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 GLYATL3Q5SZD4 288 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 AADACL4Q5VUY2 407 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 LRRN1Q6UXK5 716 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 Q6ZR03 302 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 USP51Q70EK9 711 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 PGAP1Q75T13 922 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.55□□□□□ -0.4
USP4-212ENST00000486549 GID4Q8IVV7 300 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 OR2Z1Q8NG97 314 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 ELMOD3Q96FG2 381 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 ZNF582Q96NG8 517 aaPredicted RBP12.55□□□□□ -0.4
USP4-212ENST00000486549 SLC29A1Q99808 456 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 YIPF3Q9GZM5 350 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 TOR3AQ9H497 397 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 CHODLQ9H9P2 273 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 ZNF275Q9NSD4 429 aaPredicted RBP12.55□□□□□ -0.4
USP4-212ENST00000486549 IMPAD1Q9NX62 359 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 NKIRAS2Q9NYR9 191 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 TREM2Q9NZC2 230 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 ZDHHC8Q9ULC8 765 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 CSPG4Q6UVK1 2322 aa12.55□□□□□ -0.4
USP4-212ENST00000486549 HIVEP2P31629 2446 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 IGHV4-61A0A0C4DH41 118 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 IGHV1-69-2A0A0G2JMI3 117 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 PSMD9O00233 223 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 LILRA1O75019 489 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 SELEP16581 610 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 GIFP27352 417 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 GPR6P46095 362 aaPredicted RBP12.54□□□□□ -0.4
USP4-212ENST00000486549 ZNF121P58317 390 aaPredicted RBP12.54□□□□□ -0.4
USP4-212ENST00000486549 TNFAIP6P98066 277 aaPredicted RBP12.54□□□□□ -0.4
USP4-212ENST00000486549 ZNF92Q03936 586 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 LOXL1Q08397 574 aaPredicted RBP12.54□□□□□ -0.4
USP4-212ENST00000486549 CDK5R2Q13319 367 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 RCN1Q15293 331 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 GFOD2Q3B7J2 385 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 SPRNQ5BIV9 151 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 FAM57BQ71RH2 274 aa12.54□□□□□ -0.4
USP4-212ENST00000486549 KRT77Q7Z794 578 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms