RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ZNF525Q8N782 197 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 TCEANCQ8N8B7 351 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 OR2Z1Q8NG97 314 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 FBLIM1Q8WUP2 373 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 PTP4A1Q93096 173 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 NMD3Q96D46 503 aaKnown RBP6.91□□□□□ -1.3
USP40-216ENST00000485943 CMBLQ96DG6 245 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 SLAMF6Q96DU3 332 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 ELMOD3Q96FG2 381 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 DUS3LQ96G46 650 aaKnown RBP6.91□□□□□ -1.3
USP40-216ENST00000485943 POM121L2Q96KW2 1035 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 IL4I1Q96RQ9 567 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 CNN2Q99439 309 aaKnown RBP6.91□□□□□ -1.3
USP40-216ENST00000485943 APOL4Q9BPW4 351 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 ADI1Q9BV57 179 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 OR10A2Q9H208 303 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 VCX3BQ9H321 246 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 TOR3AQ9H497 397 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 SLC25A19Q9HC21 320 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 ZNF701Q9NV72 531 aaPredicted RBP6.91□□□□□ -1.3
USP40-216ENST00000485943 TBCCD1Q9NVR7 557 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 ZDHHC8Q9ULC8 765 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 GMPPBQ9Y5P6 360 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 COMMD3-BMI1R4GMX3 469 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 APCP25054 2843 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 PLCE1Q9P212 2302 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 LRBAP50851 2863 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 CCDC168Q8NDH2 2452 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 NBPF19A0A087WUL8 3843 aa6.91□□□□□ -1.3
USP40-216ENST00000485943 PRRC2AP48634 2157 aaKnown RBP6.91□□□□□ -1.3
USP40-216ENST00000485943 RAI1Q7Z5J4 1906 aaPredicted RBP6.9□□□□□ -1.3
USP40-216ENST00000485943 TRIM64A6NGJ6 449 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 TRIM64BA6NI03 449 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 ANKRD30BLA7E2S9 258 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 CLDN25C9JDP6 229 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 DCTN6O00399 190 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 XRCC2O43543 280 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 MPZL2O60487 215 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 CDC14BO60729 498 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 CLPTM1O96005 669 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 CD8AP01732 235 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 IGHV4-39P01824 125 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 OCM2P0CE71 109 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 OCMP0CE72 109 aaPredicted RBP6.9□□□□□ -1.3
USP40-216ENST00000485943 GAAP10253 952 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 CLUP10909 449 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 RPS27P42677 84 aaKnown RBP6.9□□□□□ -1.3
USP40-216ENST00000485943 GPR6P46095 362 aaPredicted RBP6.9□□□□□ -1.3
USP40-216ENST00000485943 ALDH3A2P51648 485 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 RIDAP52758 137 aaKnown RBP6.9□□□□□ -1.3
USP40-216ENST00000485943 ERVS71-1P61550 626 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 CCL8P80075 99 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 TNFAIP6P98066 277 aaPredicted RBP6.9□□□□□ -1.3
USP40-216ENST00000485943 CDK5Q00535 292 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 MED21Q13503 144 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 KCNMB1Q16558 191 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 ZNF829Q3KNS6 432 aaPredicted RBP6.9□□□□□ -1.3
USP40-216ENST00000485943 CCDC92Q53HC0 331 aaPredicted RBP6.9□□□□□ -1.3
USP40-216ENST00000485943 ACSM5Q6NUN0 579 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 FAHD1Q6P587 224 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 DRAM2Q6UX65 266 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 CFAP77Q6ZQR2 320 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 DPY19L4Q7Z388 723 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 BIVMQ86UB2 503 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 ZNF584Q8IVC4 421 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 PQLC1Q8N2U9 271 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 GALNT4Q8N4A0 578 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 PAQR4Q8N4S7 273 aaPredicted RBP6.9□□□□□ -1.3
USP40-216ENST00000485943 BHLHE23Q8NDY6 225 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 OR8S1Q8NH09 359 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 TMEM163Q8TC26 289 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 KLF14Q8TD94 323 aaPredicted RBP6.9□□□□□ -1.3
USP40-216ENST00000485943 ASB17Q8WXJ9 295 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 SLC7A6Q92536 515 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 RDH5Q92781 318 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 UTP4Q969X6 686 aaKnown RBP6.9□□□□□ -1.3
USP40-216ENST00000485943 Q96MT0 163 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 SORCS2Q96PQ0 1159 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 HIST1H2AAQ96QV6 131 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 KCNJ15Q99712 375 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 PKP2Q99959 881 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 SSBP4Q9BWG4 385 aaPredicted RBP6.9□□□□□ -1.3
USP40-216ENST00000485943 REG4Q9BYZ8 158 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 GABARAPL1Q9H0R8 117 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 CXXC4Q9H2H0 198 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 OPA3Q9H6K4 179 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 WDR76Q9H967 626 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 DLL4Q9NR61 685 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 CLN6Q9NWW5 311 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 CYB5R1Q9UHQ9 305 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.9□□□□□ -1.3
USP40-216ENST00000485943 LHFPL6Q9Y693 200 aa6.9□□□□□ -1.3
USP40-216ENST00000485943 LOC100509620A0A075B734 347 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 IGHV1-69-2A0A0G2JMI3 117 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 A6NLC8 198 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 LRRC30A6NM36 301 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 ANXA2P2A6NMY6 339 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 C17orf100A8MU93 164 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 OVOL3O00110 214 aa6.89□□□□□ -1.31
USP40-216ENST00000485943 MITFO75030 526 aaPredicted RBP6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms