RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 DOK1Q99704 481 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 C1QTNF5Q9BXJ0 243 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 TBCCD1Q9NVR7 557 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 FAM206AQ9NX38 181 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 BABAM2Q9NXR7 383 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 RNF115Q9Y4L5 304 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 ATP23Q9Y6H3 246 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 R4GMQ9 66 aa10.57□□□□□ -0.72
SDC1-206ENST00000482879 A0A087WXM4 84 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 ACOD1A6NK06 481 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 A6NNC1 897 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 E9PI62 339 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 TBX1O43435 398 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 SMPD2O60906 423 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 SRSF10O75494 262 aaKnown RBP10.56□□□□□ -0.72
SDC1-206ENST00000482879 PLAUP00749 431 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 LCKP06239 509 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 COL8A1P27658 744 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 LOXP28300 417 aaPredicted RBP10.56□□□□□ -0.72
SDC1-206ENST00000482879 MMP16P51512 607 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 EMX1Q04741 257 aaPredicted RBP10.56□□□□□ -0.72
SDC1-206ENST00000482879 MFGE8Q08431 387 aaPredicted RBP10.56□□□□□ -0.72
SDC1-206ENST00000482879 MRPL28Q13084 256 aaKnown RBP10.56□□□□□ -0.72
SDC1-206ENST00000482879 SPHARQ15513 63 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 MED22Q15528 200 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 TBCEQ15813 527 aaPredicted RBP10.56□□□□□ -0.72
SDC1-206ENST00000482879 COLCA1Q6ZS62 124 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 PRSS45Q7RTY3 260 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 ZNF101Q8IZC7 436 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 ZNF485Q8NCK3 441 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 OR5L1Q8NGL2 311 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 OR2G2Q8NGZ5 317 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 HAVCR2Q8TDQ0 301 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 PPP1R14AQ96A00 147 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 HS3ST6Q96QI5 342 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 OR5M11Q96RB7 305 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 BCL2L14Q9BZR8 327 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 PBOV1Q9GZY1 135 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 OR10A2Q9H208 303 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 ACOT13Q9NPJ3 140 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 PLEKHB1Q9UF11 243 aaPredicted RBP10.56□□□□□ -0.72
SDC1-206ENST00000482879 POU2F3Q9UKI9 436 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 OR52A1Q9UKL2 312 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 LSM2Q9Y333 95 aaKnown RBP10.56□□□□□ -0.72
SDC1-206ENST00000482879 STARD10Q9Y365 291 aa10.56□□□□□ -0.72
SDC1-206ENST00000482879 COL12A1Q99715 3063 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 C5orf63A6NC05 138 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 MAGEA13PA6NCF6 341 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 SHISA9B4DS77 424 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 ICMTO60725 284 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 LALBAP00709 142 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 RPSAP08865 295 aaKnown RBP10.55□□□□□ -0.72
SDC1-206ENST00000482879 TGM4P49221 684 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 GTF2A1P52655 376 aaPredicted RBP10.55□□□□□ -0.72
SDC1-206ENST00000482879 PPP1CBP62140 327 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 SNTB2Q13425 540 aaKnown RBP10.55□□□□□ -0.72
SDC1-206ENST00000482879 ALKBH1Q13686 389 aaKnown RBP10.55□□□□□ -0.72
SDC1-206ENST00000482879 SNAI3Q3KNW1 292 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 BCL2L15Q5TBC7 163 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 ZNF544Q6NX49 715 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 FDX2Q6P4F2 183 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 VHLLQ6RSH7 139 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 RFPL4BQ6ZWI9 263 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 CATSPERDQ86XM0 798 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 KBTBD8Q8NFY9 601 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 OR52H1Q8NGJ2 320 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 OR1J1Q8NGS3 322 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 RNF166Q96A37 237 aaPredicted RBP10.55□□□□□ -0.72
SDC1-206ENST00000482879 COG8Q96MW5 612 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 TMEM204Q9BSN7 226 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 MOB1AQ9H8S9 216 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 TRIM36Q9NQ86 728 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 G6PC2Q9NQR9 355 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 PTTG3PQ9NZH4 202 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 ZNF319Q9P2F9 582 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 NUFIP1Q9UHK0 495 aaKnown RBP10.55□□□□□ -0.72
SDC1-206ENST00000482879 SLC22A13Q9Y226 551 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 UTP20O75691 2785 aaKnown RBP10.55□□□□□ -0.72
SDC1-206ENST00000482879 PTPN13Q12923 2485 aa10.55□□□□□ -0.72
SDC1-206ENST00000482879 J3QW42 95 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 GPRIN2O60269 458 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 GOSR1O95249 250 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 ATE1O95260 518 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 HSMCR30P0CW71 290 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 ATP6V1B1P15313 513 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 PCMT1P22061 227 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 ANOS1P23352 680 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 THBS4P35443 961 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 GLRXP35754 106 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 KIR3DL2P43630 455 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 TAS2R43P59537 309 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 NANOS3P60323 173 aaKnown RBP10.54□□□□□ -0.72
SDC1-206ENST00000482879 ERVS71-1P61550 626 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 RPS23P62266 143 aaKnown RBP10.54□□□□□ -0.72
SDC1-206ENST00000482879 NKX6-1P78426 367 aaPredicted RBP10.54□□□□□ -0.72
SDC1-206ENST00000482879 MALLQ13021 153 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 AKAP6Q13023 2319 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 DOC2BQ14184 412 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 GFOD2Q3B7J2 385 aa10.54□□□□□ -0.72
SDC1-206ENST00000482879 CCDC58Q4VC31 144 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms