RNA–Protein interactions for RNA: ENST00000475482.5

CPSF3-203, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 4

Gene CPSF3, Length 871 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-203ENST00000475482 IGHV4-39P01824 125 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 LIPAP38571 399 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 SH3BGRP55822 239 aaPredicted RBP13.54□□□□□ -0.24
CPSF3-203ENST00000475482 LSM6P62312 80 aaKnown RBP13.54□□□□□ -0.24
CPSF3-203ENST00000475482 TNK1Q13470 666 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 TPBGQ13641 420 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 TRAM1Q15629 374 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 PCK2Q16822 640 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 CCDC58Q4VC31 144 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 ANKRD16Q6P6B7 361 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 LYPD4Q6UWN0 246 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 GDPGP1Q6ZNW5 385 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 OR2AJ1Q8NGZ0 328 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 C11orf40Q8WZ69 217 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 DOK1Q99704 481 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 MROQ9BYG7 248 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 CBLN4Q9NTU7 201 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 NDUFB11Q9NX14 153 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 ENPP5Q9UJA9 477 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 GNG8Q9UK08 70 aa13.54□□□□□ -0.24
CPSF3-203ENST00000475482 SONP18583 2426 aaKnown RBP13.53□□□□□ -0.24
CPSF3-203ENST00000475482 YLPM1P49750 1951 aaKnown RBP13.53□□□□□ -0.24
CPSF3-203ENST00000475482 IGKV1D-43A0A0B4J1Z2 117 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 METTL15A6NJ78 407 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 IGLV1-44P01699 117 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 MSR1P21757 451 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 HCCSP53701 268 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 MRPS34P82930 218 aaKnown RBP13.53□□□□□ -0.24
CPSF3-203ENST00000475482 ROR2Q01974 943 aaKnown RBP13.53□□□□□ -0.24
CPSF3-203ENST00000475482 DBPQ10586 325 aaPredicted RBP13.53□□□□□ -0.24
CPSF3-203ENST00000475482 EIF2B1Q14232 305 aaKnown RBP13.53□□□□□ -0.24
CPSF3-203ENST00000475482 CLEC12BQ2HXU8 276 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 FOXB2Q5VYV0 432 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 DEGS2Q6QHC5 323 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 KLHL24Q6TFL4 600 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 FOXL2NBQ6ZUU3 175 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 KLBQ86Z14 1044 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 WDFY1Q8IWB7 410 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 PHC2Q8IXK0 858 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 MUC15Q8N387 334 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 WACQ9BTA9 647 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 C1orf198Q9H425 327 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 POLE4Q9NR33 117 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 IKZF2Q9UKS7 526 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 COPS3Q9UNS2 423 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 JMJD1CQ15652 2540 aa13.53□□□□□ -0.24
CPSF3-203ENST00000475482 IGHV1-18A0A0C4DH31 117 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 SLC22A1O15245 554 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 AIREO43918 545 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 ZNF254O75437 659 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 GABARAPO95166 117 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 GPANK1O95872 356 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 IGKV3-15P01624 115 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 GABRA5P31644 462 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 TGFBR2P37173 567 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 TGM4P49221 684 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 OR12D2P58182 307 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 ROM1Q03395 351 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 SGCAQ16586 387 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 NRN1LQ496H8 165 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 LIPKQ5VXJ0 399 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 RPL22L1Q6P5R6 122 aaKnown RBP13.52□□□□□ -0.25
CPSF3-203ENST00000475482 Q71RC1 249 aaPredicted RBP13.52□□□□□ -0.25
CPSF3-203ENST00000475482 RHOUQ7L0Q8 258 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 ZNF627Q7L945 461 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 KRT77Q7Z794 578 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.52□□□□□ -0.25
CPSF3-203ENST00000475482 ZNF679Q8IYX0 411 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 ALDH16A1Q8IZ83 802 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 YIPF7Q8N8F6 280 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 ZNF837Q96EG3 531 aaPredicted RBP13.52□□□□□ -0.25
CPSF3-203ENST00000475482 FOXN4Q96NZ1 517 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 OR8B4Q96RC9 309 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 COQ7Q99807 217 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 ISG20L2Q9H9L3 353 aaKnown RBP13.52□□□□□ -0.25
CPSF3-203ENST00000475482 CRLF2Q9HC73 371 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 GPR35Q9HC97 309 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 MOV10Q9HCE1 1003 aaKnown RBP13.52□□□□□ -0.25
CPSF3-203ENST00000475482 GDF2Q9UK05 429 aaPredicted RBP13.52□□□□□ -0.25
CPSF3-203ENST00000475482 POU2F3Q9UKI9 436 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 SSR3Q9UNL2 185 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 ABCA2Q9BZC7 2435 aa13.52□□□□□ -0.25
CPSF3-203ENST00000475482 ATP6V1G2-DDX39BF2Z307 99 aa13.51□□□□□ -0.25
CPSF3-203ENST00000475482 H7C417 338 aa13.51□□□□□ -0.25
CPSF3-203ENST00000475482 SMAD7O15105 426 aaKnown RBP13.51□□□□□ -0.25
CPSF3-203ENST00000475482 MPZL1O95297 269 aa13.51□□□□□ -0.25
CPSF3-203ENST00000475482 FARS2O95363 451 aaKnown RBP13.51□□□□□ -0.25
CPSF3-203ENST00000475482 CD1AP06126 327 aa13.51□□□□□ -0.25
CPSF3-203ENST00000475482 CELP19835 753 aa13.51□□□□□ -0.25
CPSF3-203ENST00000475482 GALP22466 123 aa13.51□□□□□ -0.25
CPSF3-203ENST00000475482 APOBEC3AP31941 199 aaPredicted RBP13.51□□□□□ -0.25
CPSF3-203ENST00000475482 RIDAP52758 137 aaKnown RBP13.51□□□□□ -0.25
CPSF3-203ENST00000475482 ARF1P84077 181 aaKnown RBP13.51□□□□□ -0.25
CPSF3-203ENST00000475482 KRTAP1-1Q07627 177 aa13.51□□□□□ -0.25
CPSF3-203ENST00000475482 MEP1BQ16820 701 aa13.51□□□□□ -0.25
CPSF3-203ENST00000475482 MST1LQ2TV78 715 aa13.51□□□□□ -0.25
CPSF3-203ENST00000475482 TP53I3Q53FA7 332 aa13.51□□□□□ -0.25
CPSF3-203ENST00000475482 PHYHD1Q5SRE7 291 aa13.51□□□□□ -0.25
CPSF3-203ENST00000475482 ZNF684Q5T5D7 378 aa13.51□□□□□ -0.25
CPSF3-203ENST00000475482 SSX6Q7RTT6 188 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms