RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 F5H5K5 113 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 TRIM77I1YAP6 450 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 TNFRSF11BO00300 401 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 HLA-DQA2P01906 255 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 SELEP16581 610 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 CPT2P23786 658 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 PYCR1P32322 319 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 MNAT1P51948 309 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 PRSS12P56730 875 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 MXRA7P84157 204 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 PAX2Q02962 417 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 LCN8Q6JVE9 175 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 RASSF6Q6ZTQ3 369 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 NAA40Q86UY6 237 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 ARHGAP24Q8N264 748 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 LNX2Q8N448 690 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 FITM2Q8N6M3 262 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 CELF2-AS1Q8N7Q2 184 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 CYB561A3Q8NBI2 242 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 ZNRF4Q8WWF5 429 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 DACT3Q96B18 629 aaPredicted RBP13.67□□□□□ -0.22
COL9A3-208ENST00000469802 CDADC1Q9BWV3 514 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 HCAR1Q9BXC0 346 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 MUC13Q9H3R2 512 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 MAGIXQ9H6Y5 334 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 TMEM165Q9HC07 324 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 VNN3Q9NY84 501 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 COMMD3-BMI1R4GMX3 469 aa13.67□□□□□ -0.22
COL9A3-208ENST00000469802 M0R135 149 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 CYB5R3P00387 301 aaPredicted RBP13.66□□□□□ -0.22
COL9A3-208ENST00000469802 GASTP01350 101 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 WNT2P09544 360 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 ANOS1P23352 680 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 PMELP40967 661 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 RAD23AP54725 363 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 MAB21L1Q13394 359 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 PCK2Q16822 640 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 ESCO2Q56NI9 601 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 LYPD4Q6UWN0 246 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 MOGAT3Q86VF5 341 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 BPIFB2Q8N4F0 458 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 ZDHHC22Q8N966 263 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 SLC37A3Q8NCC5 494 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 PROKR2Q8NFJ6 384 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 OR2T4Q8NH00 348 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 Q8TCH9 128 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 ZNF799Q96GE5 643 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 RBM4Q9BWF3 364 aaKnown RBP13.66□□□□□ -0.22
COL9A3-208ENST00000469802 NMNAT2Q9BZQ4 307 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 TMEM100Q9NV29 134 aa13.66□□□□□ -0.22
COL9A3-208ENST00000469802 TMEM89A2RUT3 159 aa13.65□□□□□ -0.22
COL9A3-208ENST00000469802 CCNB2O95067 398 aa13.65□□□□□ -0.22
COL9A3-208ENST00000469802 LCATP04180 440 aa13.65□□□□□ -0.22
COL9A3-208ENST00000469802 HLA-DPB1P04440 258 aa13.65□□□□□ -0.22
COL9A3-208ENST00000469802 CFPP27918 469 aa13.65□□□□□ -0.22
COL9A3-208ENST00000469802 CD200P41217 278 aa13.65□□□□□ -0.22
COL9A3-208ENST00000469802 RPS27P42677 84 aaKnown RBP13.65□□□□□ -0.22
COL9A3-208ENST00000469802 TPTEP56180 551 aa13.65□□□□□ -0.22
COL9A3-208ENST00000469802 ACTG1P63261 375 aa13.65□□□□□ -0.22
COL9A3-208ENST00000469802 ZNF404Q494X3 552 aa13.65□□□□□ -0.22
COL9A3-208ENST00000469802 KLF17Q5JT82 389 aaPredicted RBP13.65□□□□□ -0.22
COL9A3-208ENST00000469802 C12orf54Q6X4T0 127 aa13.65□□□□□ -0.22
COL9A3-208ENST00000469802 AQP11Q8NBQ7 271 aa13.65□□□□□ -0.22
COL9A3-208ENST00000469802 OR4Q3Q8NH05 313 aa13.65□□□□□ -0.22
COL9A3-208ENST00000469802 DGCR6LQ9BY27 220 aa13.65□□□□□ -0.22
COL9A3-208ENST00000469802 TBC1D23Q9NUY8 699 aa13.65□□□□□ -0.22
COL9A3-208ENST00000469802 OR5V1Q9UGF6 321 aa13.65□□□□□ -0.22
COL9A3-208ENST00000469802 AUP1Q9Y679 476 aa13.65□□□□□ -0.22
COL9A3-208ENST00000469802 IGHV3-64DA0A0J9YX35 117 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 TVP23AA6NH52 213 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 LRRC30A6NM36 301 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 B2RBV5 119 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 DYNC1I1O14576 645 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 ZNF205O95201 554 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 PTBP3O95758 552 aaKnown RBP13.64□□□□□ -0.23
COL9A3-208ENST00000469802 RPS2P15880 293 aaKnown RBP13.64□□□□□ -0.23
COL9A3-208ENST00000469802 ZNF823P16415 610 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 SLC25A1P53007 311 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 MS4A2Q01362 244 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 PAX8Q06710 450 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 PPP1R8Q12972 351 aaKnown RBP13.64□□□□□ -0.23
COL9A3-208ENST00000469802 MALLQ13021 153 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 CRMP1Q14194 572 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 TRIM25Q14258 630 aaKnown RBP13.64□□□□□ -0.23
COL9A3-208ENST00000469802 SNAI3Q3KNW1 292 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 ARMCX4Q5H9R4 360 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 OR2T5Q6IEZ7 315 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 PGAP1Q75T13 922 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 KLBQ86Z14 1044 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 C1orf87Q8N0U7 546 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 OR51L1Q8NGJ5 315 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 OR9Q1Q8NGQ5 310 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 OR2T29Q8NH02 315 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 C22orf15Q8WYQ4 148 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 SPTSSAQ969W0 71 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 ERGIC1Q969X5 290 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 SLCO4A1Q96BD0 722 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 TMEM246Q9BRR3 403 aa13.64□□□□□ -0.23
COL9A3-208ENST00000469802 SSBP3Q9BWW4 388 aaPredicted RBP13.64□□□□□ -0.23
COL9A3-208ENST00000469802 MIOXQ9UGB7 285 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms