RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 MND1Q9BWT6 205 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 OR51B6Q9H340 312 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 ISG20L2Q9H9L3 353 aaKnown RBP13.62□□□□□ -0.23
USP40-206ENST00000443711 BRD7Q9NPI1 651 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 TUBG2Q9NRH3 451 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 ACOXLQ9NUZ1 547 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 STARD10Q9Y365 291 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 N6AMT1Q9Y5N5 214 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 SNX5Q9Y5X3 404 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 R4GMQ9 66 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 PLCE1Q9P212 2302 aa13.62□□□□□ -0.23
USP40-206ENST00000443711 ROS1P08922 2347 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 VSTM5A8MXK1 200 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 LOC110117498-PIK3R3F6TDL0 507 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 SMPD2O60906 423 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 PLAUP00749 431 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 NGFP01138 241 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 LCKP06239 509 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 HTR1AP08908 422 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 SLC2A1P11166 492 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 GLRXP35754 106 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 PPP1CBP62140 327 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 RPS23P62266 143 aaKnown RBP13.61□□□□□ -0.23
USP40-206ENST00000443711 NKX6-1P78426 367 aaPredicted RBP13.61□□□□□ -0.23
USP40-206ENST00000443711 SNTB2Q13425 540 aaKnown RBP13.61□□□□□ -0.23
USP40-206ENST00000443711 ZNF544Q6NX49 715 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 FAM57BQ71RH2 274 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 PRSS45Q7RTY3 260 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 ZNF101Q8IZC7 436 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 KBTBD8Q8NFY9 601 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 OR52H1Q8NGJ2 320 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 OR1J1Q8NGS3 322 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 PELI1Q96FA3 418 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 MOB1AQ9H8S9 216 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 FAM206AQ9NX38 181 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 BABAM2Q9NXR7 383 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 GTF2A1LQ9UNN4 478 aa13.61□□□□□ -0.23
USP40-206ENST00000443711 COL12A1Q99715 3063 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 TRIM64A6NGJ6 449 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 TBX1O43435 398 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 SRSF10O75494 262 aaKnown RBP13.6□□□□□ -0.23
USP40-206ENST00000443711 CTAG2O75638 210 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 PNPP00491 289 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 PSMB10P40306 273 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 CDH15P55291 814 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 WNT4P56705 351 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 MALLQ13021 153 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 ZNF672Q499Z4 452 aaPredicted RBP13.6□□□□□ -0.23
USP40-206ENST00000443711 FDX2Q6P4F2 183 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 ZNF773Q6PK81 442 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 RFPL4BQ6ZWI9 263 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 SVOPQ8N4V2 548 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 GATAD2BQ8WXI9 593 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 RORBQ92753 470 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 PBOV1Q9GZY1 135 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 OR10A2Q9H208 303 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 NUFIP1Q9UHK0 495 aaKnown RBP13.6□□□□□ -0.23
USP40-206ENST00000443711 OR52A1Q9UKL2 312 aa13.6□□□□□ -0.23
USP40-206ENST00000443711 PTPN13Q12923 2485 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 E7EQL1 145 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 XRCC2O43543 280 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 ATE1O95260 518 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 THBS4P35443 961 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 MFGE8Q08431 387 aaPredicted RBP13.59□□□□□ -0.23
USP40-206ENST00000443711 SNAI3Q3KNW1 292 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 ZNF718Q3SXZ3 478 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 BCL2L15Q5TBC7 163 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 RGS7BPQ6MZT1 257 aaPredicted RBP13.59□□□□□ -0.23
USP40-206ENST00000443711 CATSPERDQ86XM0 798 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 KLBQ86Z14 1044 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 ZNF295-AS1Q8N0V1 137 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 ZNF485Q8NCK3 441 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 LILRB1Q8NHL6 650 aaPredicted RBP13.59□□□□□ -0.23
USP40-206ENST00000443711 C14orf79Q96F83 325 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 ZNF442Q9H7R0 627 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 ZNF696Q9H7X3 374 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 G6PC2Q9NQR9 355 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 CA10Q9NS85 328 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 CISD1Q9NZ45 108 aaKnown RBP13.59□□□□□ -0.23
USP40-206ENST00000443711 PTTG3PQ9NZH4 202 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 CMAHPQ9Y471 501 aa13.59□□□□□ -0.23
USP40-206ENST00000443711 A0A087WXM4 84 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 E9PI62 339 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 H3BSA7 217 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 GPRIN2O60269 458 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 SSTR2P30874 369 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 MAP2K4P45985 399 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 TGM4P49221 684 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 CCR9P51686 369 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 TLE4Q04727 773 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 SPHARQ15513 63 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 TBCEQ15813 527 aaPredicted RBP13.58□□□□□ -0.24
USP40-206ENST00000443711 TIGD6Q17RP2 521 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 CCDC58Q4VC31 144 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 RPL22L1Q6P5R6 122 aaKnown RBP13.58□□□□□ -0.24
USP40-206ENST00000443711 VHLLQ6RSH7 139 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 ELMOD2Q8IZ81 293 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 SPARTQ8N0X7 666 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 TSPAN14Q8NG11 270 aa13.58□□□□□ -0.24
USP40-206ENST00000443711 OR8B12Q8NGG6 310 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 139.8 ms