RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 NR2C1P13056 603 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 ZNF28P17035 718 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 PRKACBP22694 351 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 CASRP41180 1078 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 CBX5P45973 191 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 ZNF41P51814 821 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-207ENST00000433762 CYCSP99999 105 aaKnown RBP12.15□□□□□ -0.46
COL6A3-207ENST00000433762 FOXF1Q12946 379 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 SMAD4Q13485 552 aaKnown RBP12.15□□□□□ -0.46
COL6A3-207ENST00000433762 CDNFQ49AH0 187 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 VAX1Q5SQQ9 334 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 PRAMEF17Q5VTA0 474 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 NSUN5P2Q63ZY6 315 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 CORO6Q6QEF8 472 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 UQCC3Q6UW78 93 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 TMPRSS9Q7Z410 1059 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 CCDC36Q8IYA8 594 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 ARRDC1Q8N5I2 433 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 ACBD4Q8NC06 268 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 SLC25A43Q8WUT9 341 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-207ENST00000433762 DNASE2BQ8WZ79 361 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 B3GNT4Q9C0J1 378 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 IFT46Q9NQC8 304 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 SLC22A11Q9NSA0 550 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 B3GAT1Q9P2W7 334 aa12.15□□□□□ -0.46
COL6A3-207ENST00000433762 IGKV1D-43A0A0B4J1Z2 117 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 WIPF3A6NGB9 483 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 DBX1A6NMT0 343 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 MBTPS2O43462 519 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 IGHG1P01857 330 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 RLN2P04090 185 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 FBXW4P57775 412 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 PLPPR5Q32ZL2 321 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 SCGB2B2Q4G0G5 96 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 C1orf189Q5VU69 101 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.14□□□□□ -0.47
COL6A3-207ENST00000433762 CENPMQ9NSP4 180 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 TRBV6-7A0A0A0MS04 114 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 RNF222A6NCQ9 220 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 ADH6P28332 368 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 CX3CR1P49238 355 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 BIDP55957 195 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 OTPQ5XKR4 325 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 C3orf33Q6P1S2 294 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 TMEM17Q86X19 198 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 UEVLDQ8IX04 471 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 CCDC54Q8NEL0 328 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 OR52N4Q8NGI2 321 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 OR10S1Q8NGN2 331 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 OR6X1Q8NH79 312 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 KCNG3Q8TAE7 436 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 PHF3Q92576 2039 aaKnown RBP12.14□□□□□ -0.47
COL6A3-207ENST00000433762 DNAJA3Q96EY1 480 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 ADAT3Q96EY9 351 aaPredicted RBP12.14□□□□□ -0.47
COL6A3-207ENST00000433762 SCGB3A2Q96PL1 93 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 PDCD10Q9BUL8 212 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 PPP4R1LQ9P1A2 415 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 GHRLQ9UBU3 117 aa12.14□□□□□ -0.47
COL6A3-207ENST00000433762 FARSAQ9Y285 508 aaKnown RBP12.14□□□□□ -0.47
COL6A3-207ENST00000433762 SPDEFO95238 335 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 FCER2P06734 321 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 HEXBP07686 556 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 PGA4P0DJD7 388 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 PGA3P0DJD8 388 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 ZNF20P17024 532 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 NAAAQ02083 359 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 TMEM71Q6P5X7 295 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 SLC25A47Q6Q0C1 308 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 NAA40Q86UY6 237 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 HOGA1Q86XE5 327 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 PRSS58Q8IYP2 241 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 KDM8Q8N371 416 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 OR2AJ1Q8NGZ0 328 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 STOML3Q8TAV4 291 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 ST8SIA4Q92187 359 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 MRGPRFQ96AM1 343 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 PHF7Q9BWX1 381 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-207ENST00000433762 NMES1Q9C002 83 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 CST11Q9H112 138 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 BARX1Q9HBU1 254 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-207ENST00000433762 MED29Q9NX70 200 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 FBXL2Q9UKC9 423 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 NUDT19A8MXV4 375 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 EFSO43281 561 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 CTSSP25774 331 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 ZNF93P35789 620 aaPredicted RBP12.13□□□□□ -0.47
COL6A3-207ENST00000433762 GNALP38405 381 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 P2RY4P51582 365 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 IL13RA1P78552 427 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 PPP1R1AQ13522 171 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 HIST3H3Q16695 136 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 OR10K2Q6IF99 312 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 DEFB123Q8N688 67 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 TMEM185AQ8NFB2 350 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 THAP6Q8TBB0 222 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 PPP1R1CQ8WVI7 109 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 HLA-CQ95604 372 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 FBXW5Q969U6 566 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 GUCD1Q96NT3 240 aa12.13□□□□□ -0.47
COL6A3-207ENST00000433762 RAB19A4D1S5 217 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms