RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 OR10H3O60404 316 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 FAM20BO75063 409 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 GADD45GO95257 159 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 TXNDC12O95881 172 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 ACSM4P0C7M7 580 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 HIST1H1CP16403 213 aaKnown RBP12.12□□□□□ -0.47
SDC1-204ENST00000429035 MDKP21741 143 aaPredicted RBP12.12□□□□□ -0.47
SDC1-204ENST00000429035 MDH1P40925 334 aaKnown RBP12.12□□□□□ -0.47
SDC1-204ENST00000429035 PMELP40967 661 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 FGF12P61328 243 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 HOXA4Q00056 320 aaPredicted RBP12.12□□□□□ -0.47
SDC1-204ENST00000429035 TRAP1Q12931 704 aaKnown RBP12.12□□□□□ -0.47
SDC1-204ENST00000429035 OR8G1Q15617 311 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 SLC36A3Q495N2 470 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 GPR157Q5UAW9 335 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 RUSC1-AS1Q66K80 236 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 SLC18B1Q6NT16 456 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 C8orf82Q6P1X6 216 aaPredicted RBP12.12□□□□□ -0.47
SDC1-204ENST00000429035 LYPD2Q6UXB3 125 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 HACD2Q6Y1H2 254 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 OR6V1Q8N148 313 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 SLC26A10Q8NG04 563 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 OR10S1Q8NGN2 331 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 SLCO4A1Q96BD0 722 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 UPRTQ96BW1 309 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 ADAT1Q9BUB4 502 aaKnown RBP12.12□□□□□ -0.47
SDC1-204ENST00000429035 ZNF696Q9H7X3 374 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 SPAG4Q9NPE6 437 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 ABCD2Q9UBJ2 740 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 TMCC3Q9ULS5 477 aa12.12□□□□□ -0.47
SDC1-204ENST00000429035 PLATP00750 562 aa12.11□□□□□ -0.47
SDC1-204ENST00000429035 GGT2P36268 569 aa12.11□□□□□ -0.47
SDC1-204ENST00000429035 HIST1H3AP68431 136 aa12.11□□□□□ -0.47
SDC1-204ENST00000429035 PAX2Q02962 417 aa12.11□□□□□ -0.47
SDC1-204ENST00000429035 GK2Q14410 553 aaPredicted RBP12.11□□□□□ -0.47
SDC1-204ENST00000429035 ZNF181Q2M3W8 571 aa12.11□□□□□ -0.47
SDC1-204ENST00000429035 DEFB112Q30KQ8 113 aa12.11□□□□□ -0.47
SDC1-204ENST00000429035 HSP90B2PQ58FF3 399 aa12.11□□□□□ -0.47
SDC1-204ENST00000429035 SLC35F1Q5T1Q4 408 aa12.11□□□□□ -0.47
SDC1-204ENST00000429035 HIST2H3PS2Q5TEC6 136 aa12.11□□□□□ -0.47
SDC1-204ENST00000429035 DCDC5Q6ZRR9 648 aa12.11□□□□□ -0.47
SDC1-204ENST00000429035 HIST2H3AQ71DI3 136 aa12.11□□□□□ -0.47
SDC1-204ENST00000429035 PGAP1Q75T13 922 aa12.11□□□□□ -0.47
SDC1-204ENST00000429035 LNX2Q8N448 690 aa12.11□□□□□ -0.47
SDC1-204ENST00000429035 PCGF1Q9BSM1 259 aa12.11□□□□□ -0.47
SDC1-204ENST00000429035 DCAF13Q9NV06 445 aaKnown RBP12.11□□□□□ -0.47
SDC1-204ENST00000429035 C3orf80F5H4A9 247 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 M0R135 149 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 PHYHO14832 338 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 ENSAO43768 121 aaKnown RBP12.1□□□□□ -0.47
SDC1-204ENST00000429035 PPIAL4GP0DN37 164 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 ZNF823P16415 610 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 RPS27P42677 84 aaKnown RBP12.1□□□□□ -0.47
SDC1-204ENST00000429035 TPTEP56180 551 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 SMIM11AP58511 58 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 MAB21L1Q13394 359 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 OR8B8Q15620 311 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 TUSC1Q2TAM9 212 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 RFX4Q33E94 735 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 CLEC12AQ5QGZ9 265 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 WDR25Q64LD2 544 aaPredicted RBP12.1□□□□□ -0.47
SDC1-204ENST00000429035 SFRP4Q6FHJ7 346 aaPredicted RBP12.1□□□□□ -0.47
SDC1-204ENST00000429035 TREML4Q6UXN2 200 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 C9orf139Q6ZV77 190 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 NAA40Q86UY6 237 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 FITM2Q8N6M3 262 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 MCUR1Q96AQ8 359 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 TMIGD2Q96BF3 282 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 CMTM5Q96DZ9 223 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 ZNF799Q96GE5 643 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 C7orf34Q96L11 122 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 DHRS1Q96LJ7 313 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 FAM107BQ9H098 131 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 CCDC134Q9H6E4 229 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 MARCH7Q9H992 704 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 KIF17Q9P2E2 1029 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 N6AMT1Q9Y5N5 214 aa12.1□□□□□ -0.47
SDC1-204ENST00000429035 hCG_1807616A0A1W2PRN6 198 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 GGT3PA6NGU5 568 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 TVP23AA6NH52 213 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 A6NLC8 198 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 C22orf46C9J442 243 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 CLDN34H7C241 214 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 CRYBA1P05813 215 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 CA6P23280 308 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 CPT2P23786 658 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 RRM2P31350 389 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 PYCR1P32322 319 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 CD200P41217 278 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.09□□□□□ -0.47
SDC1-204ENST00000429035 ECH1Q13011 328 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 MPPED2Q15777 294 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 C16orf87Q6PH81 154 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 PROKR2Q8NFJ6 384 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 OR52L1Q8NGH7 329 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 OR2AE1Q8NHA4 323 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 SPTSSAQ969W0 71 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 FN3KRPQ9HA64 309 aa12.09□□□□□ -0.47
SDC1-204ENST00000429035 NOP16Q9Y3C1 178 aaKnown RBP12.09□□□□□ -0.47
SDC1-204ENST00000429035 KIR2DS1A0A191URI9 304 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms